| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_1213 |
|---|
| Symbol | |
|---|
| ID | 4603465 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella amazonensis SB2B |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008700 |
|---|
| Strand | - |
|---|
| Start bp | 1493107 |
|---|
| End bp | 1494063 |
|---|
| Gene Length | 957 bp |
|---|
| Protein Length | 318 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 639780560 |
|---|
| Product | decaheme cytochrome c MtrD |
|---|
| Protein accession | YP_927090 |
|---|
| Protein GI | 119774350 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | [TIGR01905] doubled CXXCH domain
[TIGR03508] decaheme c-type cytochrome, DmsE family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.766107 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAGATGG AAATCCCCTT GCAATGCAGG ATGCTGACCC TGTGTCTGCT GAGCCTGCTG
TTTTCGTTTC AGGCAGCAGC AACGCCCTGG AAAGACATGC CGCCGTCAGA GGTTGAGGCG
ACGCTCGACA AAAAGTTCGC CGAAGGCAAG TACTCCCCAA AGGGTGCTGA CAGCTGTTTG
ATGTGCCACA AGAAGAGCGC AACCGTCATG GCGCTGTTCG ACAACGTCCA CGGCAGTACC
CACTCCAGCG CGTCCCCCAT GGCCGATCTC CAATGCGAAG CCTGCCACGG CCCTATGGGC
AACCACAACA AGGGCGGTAA GGAACCGATG ATCACCTTCG GTAAAGACGC CCCGGTCGCC
GCCGACAAAC AAAACAGCGT GTGCCTTTCC TGCCATCAGG ACGACAAGCG TATGGCCTGG
GAAGGCAGCC ATCACAACAG CGCTGACATT CCCTGCGCAA GCTGCCACCT GATCCATACT
GCCAAGGATC CGGTTCAGCA AAGAGCCACC GAAGTCGAGG TGTGTACTGC GTGTCATCTC
GAACAAAAGG CCGATATCCA CAAGCGCTCC AGTCATCCAG TCGAAAACGG CCAGATGGTG
TGCAGTGACT GCCACAATCC CCACGGAAGC CTGGGTGAGT CCAGCCTTAA GCAGATGAGC
ATCAATGAGA ATTGCTATGC CTGCCACGCC GAAAAACGCG GTCCCAAACT CTGGGAACAC
GCCCCGGTAA CAGATAACTG CGCCAGTTGC CATCAGGTGC ATGGCAGCGT CAACGAAGCC
ATGCTGACGA TTAAGGCACC TCAGCTGTGT CAGCAATGCC ATGCCAGTGT TGGCCACACC
GCCAATGCCC AGTTCGGCAC GGCACCCAGT GCCTTTACCG CCGGACAGAG CTGTATGAAC
TGCCACAGTC AGGTCCACGG CTCAAATCAT CCATCCGGCA AGCTGCTGCA GCGCTAA
|
|---|
| Protein sequence | MKMEIPLQCR MLTLCLLSLL FSFQAAATPW KDMPPSEVEA TLDKKFAEGK YSPKGADSCL
MCHKKSATVM ALFDNVHGST HSSASPMADL QCEACHGPMG NHNKGGKEPM ITFGKDAPVA
ADKQNSVCLS CHQDDKRMAW EGSHHNSADI PCASCHLIHT AKDPVQQRAT EVEVCTACHL
EQKADIHKRS SHPVENGQMV CSDCHNPHGS LGESSLKQMS INENCYACHA EKRGPKLWEH
APVTDNCASC HQVHGSVNEA MLTIKAPQLC QQCHASVGHT ANAQFGTAPS AFTAGQSCMN
CHSQVHGSNH PSGKLLQR
|
|---|
| |