| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_1200 |
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| Symbol | |
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| ID | 4603452 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | - |
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| Start bp | 1471185 |
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| End bp | 1472867 |
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| Gene Length | 1683 bp |
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| Protein Length | 560 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 639780547 |
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| Product | pyridoxal-dependent decarboxylase |
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| Protein accession | YP_927077 |
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| Protein GI | 119774337 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0076] Glutamate decarboxylase and related PLP-dependent proteins |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.644401 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCACCGG CGGTGCACAA GACAGCCAGA CGTGATGAGA TGACAGAAAA ACACCTGCGC
AAGGCCACAG CCTCTGAAGA CAACCTGTTG CGGATCTTTA CCGTACCGGA GGCGGCTGAC
TCTACCCTCG GCCGTATCGA GCAGCAGCTG TCTGCCGATC TTGCCGGTTT CCTGCAGGAC
AATATTGCCG CGCTGGAACA ACCTCTGTCA GATATTGAGG ATCACTTCTA CAGTGTCGAA
GTGCCACCAC AACCCCAGTT TGTCTCCGAT TACGTGGATG ACATCATGGC TCATTTGGTG
GCGCAGTCGG TACACACTGC TGCGCCATCG TTTATCGGCC ACATGACCTC TGCCCTGCCC
TATTTCCTGT TGCCCCTGTC GAAACTGATG GTGGGGCTGA ATCAGAATCT GGTGAAAATC
GAAACCTCCA AGGCCTTTAC CCCCATGGAG CGTCAGGTGC TGGGCATGAT GCACCACCTG
ATTTATGGCC GCGAAAAGGA TTTCTATCAG GGCTTCCTCC ACAGCGCCAG CCATGCACTG
GGGGCTTTTT GCTCCGGCGG AACCGTTGCC AACATCACAG CGCTGTGGAT TGCCCGCAAC
CAGTTACTGA AAGCCCGTGG TAACTTCAGG GGCGTGACCC GTGAAGGCCT GCATAAGGCG
CTCAAACATT ATGGCTGGGA TGATTTGGCG ATTCTGGTGT CTGAACGTGG TCACTACTCC
CTCGGCAAAG CCGCAGATCT GCTTGGCATC GGCCGGGACA ACATCATCAG CGTACCGGTG
GATGCCCATA ATAAGGTGGA TATTGACGCC ATGCGGGTTG CTGCAGCCCA ATTACAGGCG
CGCAATATCC GGGTAATGGC CATTGTCGGC GTCGCGGGCA CCACAGAAAC CGGCAATGTG
GATCCTCTTG CTGAGATGGC AGCCCTTGCC AAAGAGATAG ACTGCCATTT CCATGTGGAT
GCGGCCTGGG GCGGCGCTAC CCTGCTGTCT GAAAAGTATC GTTATCTGCT CAGCGGTATC
GAACTGGCGG ATTCGGTCAC CATAGATGCC CACAAGCAAA TGTATGTGCC CATGGGCGCA
GGTATGGTGC TGTTTAAAAA TCCAAGCTTT GCCTCTGCCA TCGAGCATCA TGCCGAGTAC
ATCCTGCGTC AGGGCTCCAA GGATCTGGGC AGCCAGACTC TGGAAGGTTC ACGCCCCGGG
ATGGCGATGC TGGTTCATGC CTGTTTGAAC ATCATTGGCC GCGAAGGCTA CGAAATCCTG
ATAAACGGCT CGCTGGAGCG CGCCCGATTT TTTGCGGGGC TCATTGAGGC CCAAACGGAT
TTTGAGCTTA TCAGCGAACC GGAGCTGTGC CTGCTGACCT ACAGATACGT GCCTGCAAAG
GTGCGCCTGG CACTGGCACA GGCAGTAGCG CAGCACGACA AAGATAAACT CGATGCCATT
GGCAGTCTGC TTGACGATCT CACCCGCGCC ATTCAGAAAA CCCAGCGCGA GCAGGGTAAA
TCCTTTGTCT CCCGCACCCG TATCACGCCC AAGCGCTATG GTAACGACAA GCGCACCGTG
TTCAGGGTTG TGCTGGCCAA TCCCCTCACA ACCGAGGCCA TACTGGCCGC GGTGCTGGAA
GAGCAACGAG CGCTGGCAAG CGGGGAAACT GAGATACTGC AGGCCCTCGA CGCTCTGTGT
TGA
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| Protein sequence | MPPAVHKTAR RDEMTEKHLR KATASEDNLL RIFTVPEAAD STLGRIEQQL SADLAGFLQD
NIAALEQPLS DIEDHFYSVE VPPQPQFVSD YVDDIMAHLV AQSVHTAAPS FIGHMTSALP
YFLLPLSKLM VGLNQNLVKI ETSKAFTPME RQVLGMMHHL IYGREKDFYQ GFLHSASHAL
GAFCSGGTVA NITALWIARN QLLKARGNFR GVTREGLHKA LKHYGWDDLA ILVSERGHYS
LGKAADLLGI GRDNIISVPV DAHNKVDIDA MRVAAAQLQA RNIRVMAIVG VAGTTETGNV
DPLAEMAALA KEIDCHFHVD AAWGGATLLS EKYRYLLSGI ELADSVTIDA HKQMYVPMGA
GMVLFKNPSF ASAIEHHAEY ILRQGSKDLG SQTLEGSRPG MAMLVHACLN IIGREGYEIL
INGSLERARF FAGLIEAQTD FELISEPELC LLTYRYVPAK VRLALAQAVA QHDKDKLDAI
GSLLDDLTRA IQKTQREQGK SFVSRTRITP KRYGNDKRTV FRVVLANPLT TEAILAAVLE
EQRALASGET EILQALDALC
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