| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_1143 |
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| Symbol | |
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| ID | 4603395 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | + |
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| Start bp | 1392485 |
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| End bp | 1393285 |
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| Gene Length | 801 bp |
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| Protein Length | 266 aa |
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| Translation table | 11 |
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| GC content | 53% |
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| IMG OID | 639780490 |
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| Product | di-trans,poly-cis-decaprenylcistransferase |
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| Protein accession | YP_927020 |
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| Protein GI | 119774280 |
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| COG category | [I] Lipid transport and metabolism |
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| COG ID | [COG0020] Undecaprenyl pyrophosphate synthase |
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| TIGRFAM ID | [TIGR00055] undecaprenyl diphosphate synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.00716558 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 7 |
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| Fosmid unclonability p-value | 0.11799 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGTCTTCCA ATAGGGAAAT TGCCGCTGAT TTGGCGTTGG ATGCTCAACT CGGTGATGTC
TCAGGGTTGG TCAACCAGTC TCTGCCCCAG CATGTGGCCA TCATTATGGA TGGCAATGGC
CGTTGGGCAC AGGCACAGGG CAAACCCAGA GTAATGGGGC ACAAGGCGGG TGTTAAGGCC
GTGCGCCGGG CTGTGAGCAC GGCAAGCCAA TTGGGCATCA AGTCGTTAAC CCTGTTTGCC
TTTTCCAGTG AAAACTGGCG TCGTCCCGAT GCTGAAGTCA GCTTGCTGAT GGAACTGTTT
TTCACGGTGC TGAAACGGGA AATCAAGCTG CTCAGCAAAA ATGGGGTCAG GTTGAACATT
ATCGGTGATA CCAGCCGTTT TTCGGACAGG CTGCAACAGC AAATTCGCGA CGCCGAAGAA
AAAACGGCGG CAAACACAGG CCTTATTCTG AACGTTGCCG CCAATTACGG TGGGCGCTGG
GACATACTCC AGGCAGCACA GCAGCTGGCA CAAAAGCTGG CATCTGGTGA AATCGACAGC
AGTCAGTTTA CCGAAGAGGC CTTAAGTCAG CATTTATGCA TGCAAAGTCA GGGCGAAGTT
GATTTAATGA TCCGTACTGG TGGCGATTAC CGCATCAGCA ATTTTGTGCT CTGGCAGGCA
GCCTACGCTG AGTTGGTGTT TACTGACACC CTGTGGCCGG ACTTCGACGA GCAATGTTTC
AAAGAGGCTA TCGCTTTATT TGCGAGCCGC CAGCGCCGTT TTGGTTTGAC CGGAAGTCAA
ATCGAAGCCT TGCGTGCTTA A
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| Protein sequence | MSSNREIAAD LALDAQLGDV SGLVNQSLPQ HVAIIMDGNG RWAQAQGKPR VMGHKAGVKA
VRRAVSTASQ LGIKSLTLFA FSSENWRRPD AEVSLLMELF FTVLKREIKL LSKNGVRLNI
IGDTSRFSDR LQQQIRDAEE KTAANTGLIL NVAANYGGRW DILQAAQQLA QKLASGEIDS
SQFTEEALSQ HLCMQSQGEV DLMIRTGGDY RISNFVLWQA AYAELVFTDT LWPDFDEQCF
KEAIALFASR QRRFGLTGSQ IEALRA
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