Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sama_1141 |
Symbol | pyrH |
ID | 4603393 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella amazonensis SB2B |
Kingdom | Bacteria |
Replicon accession | NC_008700 |
Strand | + |
Start bp | 1391076 |
End bp | 1391801 |
Gene Length | 726 bp |
Protein Length | 241 aa |
Translation table | 11 |
GC content | 52% |
IMG OID | 639780488 |
Product | uridylate kinase |
Protein accession | YP_927018 |
Protein GI | 119774278 |
COG category | [F] Nucleotide transport and metabolism |
COG ID | [COG0528] Uridylate kinase |
TIGRFAM ID | [TIGR02075] uridylate kinase |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 1 |
Plasmid unclonability p-value | 0.0000000922759 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
| |
Fosmid Coverage information |
Num covering fosmid clones | 7 |
Fosmid unclonability p-value | 0.110772 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGAGCACCA ATCCAAAACC AGCATTTCGA CGCATTCTTC TTAAGTTAAG TGGTGAGGCC CTGATGGGCT CTGAGGGCTT CGGTATTGAT CCCAGCGTAC TGGATCGTAT GGCTCAGGAA ATCAAAGAAC TGGTAGAACT GGGCATCCAG GTCGGGGTAG TGATTGGTGG TGGTAACCTG TTCCGTGGAG AAGGTCTTGC CAAGGCAGGT ATGAACCGCG TGGTGGGTGA CCACATGGGT ATGCTGGCGA CCGTGATGAA TGGTCTGGCA ATGCGCGATG CCTTGCACCG TGCCTATGTG AATGCCCGTC TGATGTCTGC CATTCCCTTG AAAGGGGTGT GTGACGATTA TAATTGGGCC GAGGCTATCA GCCTGCTCAA GTCCGGACGT GTGGTGATAT TCGCTGCCGG TACCGGTAAT CCTTTCTGCA CCACCGACTC GGCGGCCTGT CTGCGCGGCA TTGAAATTGA AGCCGATGTC GTGCTAAAAG GCACCAAAGT TGATGGCGTT TACTCCGCCG ATCCTATGAA GGACCCGGAA GCCGTCAAAT ACGATGAACT CTCTTACGCC GAAGTTCTCG ATAAAGAATT GAAAGTGATG GACTTATCTG CCTTTACCAT GGCGCGTGAC CATGATATGC CTATTTTGGT ATTCAACATG AACAAGCCCG GTGCCCTGCG CCGTGTTATC ATGGGTGAAG GTGAAGGCAC CATCATCAAA AAATAA
|
Protein sequence | MSTNPKPAFR RILLKLSGEA LMGSEGFGID PSVLDRMAQE IKELVELGIQ VGVVIGGGNL FRGEGLAKAG MNRVVGDHMG MLATVMNGLA MRDALHRAYV NARLMSAIPL KGVCDDYNWA EAISLLKSGR VVIFAAGTGN PFCTTDSAAC LRGIEIEADV VLKGTKVDGV YSADPMKDPE AVKYDELSYA EVLDKELKVM DLSAFTMARD HDMPILVFNM NKPGALRRVI MGEGEGTIIK K
|
| |