| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_1139 |
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| Symbol | rpsB |
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| ID | 4603391 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | + |
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| Start bp | 1389252 |
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| End bp | 1390028 |
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| Gene Length | 777 bp |
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| Protein Length | 258 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 639780486 |
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| Product | 30S ribosomal protein S2 |
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| Protein accession | YP_927016 |
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| Protein GI | 119774276 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0052] Ribosomal protein S2 |
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| TIGRFAM ID | [TIGR01011] ribosomal protein S2, bacterial type |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.0000000783966 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 7 |
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| Fosmid unclonability p-value | 0.110199 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGGGACGCG TGGAGGTCAA ACCCCTTTTA CTTTTTAAGG TATTCAAAAT GACTACAGTT
TCAATGCGCG ACATGCTCCA GGCCGGTGTT CACTTCGGTC ACCAGACCCG TTACTGGAAC
CCAAAGATGA AGCCATTCAT CTTCGGTGCC CGCAACGGTG TACACATCAT CAACCTCGAG
CACACTGTAC CAATGTTCAA CGAAGCTCTG GCTTTCATCA GCAACGTAGC TTCCAAGAAA
GGTAAAATCC TGTTTGTTGG TACCAAGCGC GCTGCCAGCG AAGCTATCAA AGAAGCTGCT
GTTTCTTGTG ACCAGTACTA CGTTGATCAC CGCTGGCTCG GCGGTATGCT GACCAACTGG
AAAACCGTTC GTCAGTCTAT CAAGCGTCTG AAAGAGCTGG AAACCCAGTC TGTTGACGGT
ACTTTCGACA AGCTGACCAA GAAAGAAGCC CTGATGCGCA CTCGCGAGCT GGAAAAGCTC
GAGAAGTCTC TGGGTGGTAT CAAGAACATG GGCGGTCTGC CTGATGCTCT GTTCGTGATC
GGTGCCGACC ACGAGCACAT CGCCATCAAA GAAGCCAACA ACCTGGGTAT CCCAGTAGTT
GCTGTGGTTG ATACCAACGC TTCTCCAGAC GGCGTGAACT ACATCGTTCC TGGTAACGAC
GACGCTATGC GTGCTATCCG CCTGTACACC GAAGCTGCTG CCACTGCTGC CAAAGCTGGC
CGTGGTCAGG ATCTGGCTGT ACAAGCTGAG CAAGACGGTT TCGTTGAAGC CGAATAA
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| Protein sequence | MGRVEVKPLL LFKVFKMTTV SMRDMLQAGV HFGHQTRYWN PKMKPFIFGA RNGVHIINLE
HTVPMFNEAL AFISNVASKK GKILFVGTKR AASEAIKEAA VSCDQYYVDH RWLGGMLTNW
KTVRQSIKRL KELETQSVDG TFDKLTKKEA LMRTRELEKL EKSLGGIKNM GGLPDALFVI
GADHEHIAIK EANNLGIPVV AVVDTNASPD GVNYIVPGND DAMRAIRLYT EAAATAAKAG
RGQDLAVQAE QDGFVEAE
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