| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_1133 |
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| Symbol | |
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| ID | 4603385 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | + |
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| Start bp | 1381642 |
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| End bp | 1383099 |
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| Gene Length | 1458 bp |
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| Protein Length | 485 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | 639780480 |
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| Product | PTS system, glucose-specific IIBC component |
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| Protein accession | YP_927010 |
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| Protein GI | 119774270 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1263] Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific
[COG1264] Phosphotransferase system IIB components |
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| TIGRFAM ID | [TIGR00826] PTS system, glucose-like IIB component |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.60962 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCACCAG CAAGTTCAGC ACGGCCTGAA CGACTAACCC GCCTGAACCG ACACTGGTTC
AGGTTTGCCC AGCGGCTGTC GCAAACGCTG CTGATCCCCA TTGCCATACT CCCGGCAGCG
GGCGTCATGA TAGGGATTGC TACTAATCCC TTGCCCTTTA TTCCAGATGT GGCCAATGTG
TTGATGTTGA GTGTGGGCAA GCTCATCTTC GACATTATGC CCATGCTGTT TGCCATCGCG
GTCGCTATTG GTTTCTGCCG CGATCAGGGA ATTGCCGCCT TCTCTGCTGC CTTTGGCTAC
GGTGTGCTGC TGTCTACTCT GGCAGCAGCG GCCAAGGTTT ATCATTTGCC GTCTCACATA
GTGTGGGGTA CGCCCACCAT AGATACCGGC ATAGCCGGCG GCATGTTAGT GGGGGGGATT
ACCTGCGTTG CGGTGCGGCT CAGTGAAAAG CTCAGGCTGC CTGCCGTGTT TTCGTTTTTT
GAAGGCAGAC GCAGCGCCCC GCTGATAATG ATCCCCCTGG TGATGTTGCT CGCTGTAATG
CTGGCGTTTA TCTGGCCGCC ACTTGCCTTA TCCATTGAGC GTTTATCTGA CTGGGCCGTG
TATCAGGAAC CTGCGATTGC CTTCGGATTT TACGGTATGG TCGAACGGTT GTTGTTGCCG
CTTGGGCTGC ACCACATCTG GAATGCGCCT TTTTATCTGG AAGTGGGTCA ATATGCCCAC
GATGGCGAAA TTGTACGGGG GGAGATGGCG AGATATTTTG CTGGCGATCC TTCTGCGGGG
AACCTTGCCG GTGGTTACCT GATTAAAATG TGGGGGCTGC CTGCGGCGGC ACTGGCCATA
TGGCGCTGCG CGGATAGAAA TCAACGTAAC CGGGTTGCCG GGGTCATGTT ATCTGCCGCG
ACTGCCAGTT GGCTGACCGG TGTGACAGAG CCGATTGAGT TCGCTTTTTT GTTTGTGGCA
CCACTCTTGT ACTTGTGTCA TGCCCTGCTG ACGGGTCTCG CTTACAGCAT CGCCATTTTG
CTTGATATGC ACCACAGTGT GGTGTTTTCC CACGGATTGG TGGATTTCGT GCTCCTGTTT
CCGCAATCGA GTAATACCCA TTGGATTTGG TTCCTGGGGC CGCTGACATT TGTGATTTAT
TACATTCTTT TCCGGGCCAG TATTCTGGCG TTTAACCTGA AAACCCCCGG CCGCTTTGAA
GCCGATACAG GACAGAAACG TAATTTGATT GCCATCGTCT CTGCGCTGGG CGGCGGCGGA
AACATTGCTG ATTTATCAGC TTGCCTGACC CGTCTGCGGA TAAGTGTCGC CGATCCTTCC
CAGGTAGACA GACAAAGGTT AATGTCATTG GGTGCCAAAG GCGTGATAGT GGTGGGCAGT
GGTGTTCAGC TGGTGTTTGG TACCAAGGCC GAGACCTTAA GAAAGCTGCT GCAGCGTTAC
CTGGATACAC GTAGTTAA
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| Protein sequence | MAPASSARPE RLTRLNRHWF RFAQRLSQTL LIPIAILPAA GVMIGIATNP LPFIPDVANV
LMLSVGKLIF DIMPMLFAIA VAIGFCRDQG IAAFSAAFGY GVLLSTLAAA AKVYHLPSHI
VWGTPTIDTG IAGGMLVGGI TCVAVRLSEK LRLPAVFSFF EGRRSAPLIM IPLVMLLAVM
LAFIWPPLAL SIERLSDWAV YQEPAIAFGF YGMVERLLLP LGLHHIWNAP FYLEVGQYAH
DGEIVRGEMA RYFAGDPSAG NLAGGYLIKM WGLPAAALAI WRCADRNQRN RVAGVMLSAA
TASWLTGVTE PIEFAFLFVA PLLYLCHALL TGLAYSIAIL LDMHHSVVFS HGLVDFVLLF
PQSSNTHWIW FLGPLTFVIY YILFRASILA FNLKTPGRFE ADTGQKRNLI AIVSALGGGG
NIADLSACLT RLRISVADPS QVDRQRLMSL GAKGVIVVGS GVQLVFGTKA ETLRKLLQRY
LDTRS
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