Gene Sama_1074 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSama_1074 
Symbol 
ID4603326 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella amazonensis SB2B 
KingdomBacteria 
Replicon accessionNC_008700 
Strand
Start bp1300792 
End bp1301481 
Gene Length690 bp 
Protein Length229 aa 
Translation table11 
GC content56% 
IMG OID639780421 
Productresponse regulator receiver protein 
Protein accessionYP_926951 
Protein GI119774211 
COG category[K] Transcription
[T] Signal transduction mechanisms 
COG ID[COG0745] Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain 
TIGRFAM ID[TIGR02154] phosphate regulon transcriptional regulatory protein PhoB 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0000246777 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.491091 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACTGCAA GGATTTTGAT TGTTGAAGAT GAGTTGGCCA TCCGCGAGAT GCTGACATTC 
GTGATGGAAC AACACGGTTT CACGACCTCG GTTGCCGAAG ATTTTGACTC GGCTCTTGGG
CAGCTTCAGG AACCCTACCC AGATCTCATC CTGCTGGACT GGATGTTTCC GGGCGGCAGT
GGCATTCAAC TTGCCAAACG CCTCAAGCAA GACGAGTTTA CCCGCCAGAT CCCGGTCATC
ATGCTCACCG CCCGTGGTGA GGAAGAAGAC AAGGTCAAGG GCCTGGAAGT GGGGGCCGAC
GACTATATTA CCAAGCCTTT CTCCCCCAAG GAGCTGGTGG CCCGTATCAA GGCTGTACTG
CGCCGCGCAG CGCCAACCCG CCTTGAAGAA ACAATCGATG TGCAGGGGTT GACCCTGGAT
CCGGTAAGCC ACCGAGTCAC AGCCGGTGAT ACAGTGCTGG ATATGGGACC GACCGAGTTT
CGTCTGCTGC ATTTCTTTAT GACTCACCCC GAGCGTGTTT ACAGCCGTGA ACAGCTGCTG
GATAACGTCT GGGGCACCAA TGTGTACGTA GAAGACAGAA CCGTAGACGT GCACATTCGT
CGTTTGCGCA AGGCCGTTGA GCCTTCGGGG CATGACCGCC TCATTCAAAC CGTCCGCGGC
GCAGGATACC GTTTTTCCAC TCGGGTTTAG
 
Protein sequence
MTARILIVED ELAIREMLTF VMEQHGFTTS VAEDFDSALG QLQEPYPDLI LLDWMFPGGS 
GIQLAKRLKQ DEFTRQIPVI MLTARGEEED KVKGLEVGAD DYITKPFSPK ELVARIKAVL
RRAAPTRLEE TIDVQGLTLD PVSHRVTAGD TVLDMGPTEF RLLHFFMTHP ERVYSREQLL
DNVWGTNVYV EDRTVDVHIR RLRKAVEPSG HDRLIQTVRG AGYRFSTRV