| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_1053 |
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| Symbol | |
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| ID | 4603305 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | + |
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| Start bp | 1274973 |
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| End bp | 1276103 |
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| Gene Length | 1131 bp |
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| Protein Length | 376 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 639780400 |
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| Product | oxaloacetate decarboxylase |
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| Protein accession | YP_926930 |
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| Protein GI | 119774190 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG1883] Na+-transporting methylmalonyl-CoA/oxaloacetate decarboxylase, beta subunit |
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| TIGRFAM ID | [TIGR01109] sodium ion-translocating decarboxylase, beta subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 8 |
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| Fosmid unclonability p-value | 0.24493 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGAAGGAT TGATGGCTTT TTGGGCCGAA ACGGGTATTG CCCACTTTAC CCTGGGGCAG
CTACTGATGA TGGCGGTGGG ACTGGTGCTC TTATACCTGG CCATTGCCAA GGGATTTGAG
CCGCTGTTGC TGTTGCCCAT AGGTTTTGGC GCAGTGCTTG CCAATATCCC CAATGCCGGA
TTTACCGAGG AGGGGGGCTT ACTCTATTAC CTCTATCACG TTGGACTCGA GACAGGCATC
TTCCCGCTGC TGATTTTCCT CGGTGTAGGG GCATTAACGG ACTTTGGTGC TTTGATTGCC
AACCCCAAAA CACTGCTTTT GGGGGCTGCG GCCCAGTTCG GTATTTTCGC CACCTTGCTC
GGCGCCATTG CGCTCAATCT GGTACCCGGG TTTGAGTTTT CCATGAAGGA TGCGGCGGCC
ATTGCGATTA TTGGTGGCGC CGACGGACCC ACGGCTATTT TCCTCTCTAC CAAGCTGGCG
CCAGAGCTTC TGGGAGCCAT TGCGGTGGCC GCTTACTCCT ACATGGCACT GGTACCCATT
ATCCAGCCGC CCATTATGCG GGCGCTCACC ACCAAGGAAG AGCGCGCCAT CAAGATGGAG
CAGCTGCGGG AAGTGAGCAA AAAAGAAAAG GTGCTGTTTC CCTTAATGGT ACTGGGACTG
ACCACTTTGT TTTTGCCCGC AGCGACACCG CTTGTTGGTA TGTTCTGCCT TGGCAACCTG
ATGCGTGAGT CCGGTGTGGT GGACCGTCTC TCTAACACAG CGCAAAACGA GCTTATCAAT
ATAGTCACCA TCTTCCTGGG GTTGGCGGTG GGCTCCAAGC TCTCGGCCGA GCAATTTTTG
CGGGTAGAGA CTCTTGGGAT TCTGGTGCTT GGCGCCGTAG CCTTCTCCAT TGGCACCGCG
GCTGGTGTGC TGATGGCAAA GGTGCTCTGC AAGCTCAGTG GTGGCAAGGT CAATCCGCTG
ATTGGTGCAG CAGGTGTGTC TGCGGTGCCT ATGGCTGCAA GGGTAGCCAA CAAGGTGGGA
CTTGAGGCGA ATCCGCACAA TTATCTGCTG ATGCACGCCA TGGGGCCCAA TGTGGCCGGT
GTGCTCGGCA GTGCGGTGGC TGCCGGTATC TTGCTCGCAG TATTGGGGTA G
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| Protein sequence | MEGLMAFWAE TGIAHFTLGQ LLMMAVGLVL LYLAIAKGFE PLLLLPIGFG AVLANIPNAG
FTEEGGLLYY LYHVGLETGI FPLLIFLGVG ALTDFGALIA NPKTLLLGAA AQFGIFATLL
GAIALNLVPG FEFSMKDAAA IAIIGGADGP TAIFLSTKLA PELLGAIAVA AYSYMALVPI
IQPPIMRALT TKEERAIKME QLREVSKKEK VLFPLMVLGL TTLFLPAATP LVGMFCLGNL
MRESGVVDRL SNTAQNELIN IVTIFLGLAV GSKLSAEQFL RVETLGILVL GAVAFSIGTA
AGVLMAKVLC KLSGGKVNPL IGAAGVSAVP MAARVANKVG LEANPHNYLL MHAMGPNVAG
VLGSAVAAGI LLAVLG
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