Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sama_1050 |
Symbol | |
ID | 4603302 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella amazonensis SB2B |
Kingdom | Bacteria |
Replicon accession | NC_008700 |
Strand | + |
Start bp | 1271214 |
End bp | 1271408 |
Gene Length | 195 bp |
Protein Length | 64 aa |
Translation table | 11 |
GC content | 49% |
IMG OID | 639780389 |
Product | carbon storage regulator |
Protein accession | YP_926927 |
Protein GI | 119774187 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG1551] Carbon storage regulator (could also regulate swarming and quorum sensing) |
TIGRFAM ID | [TIGR00202] carbon storage regulator (csrA) |
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Plasmid Coverage information |
Num covering plasmid clones | 6 |
Plasmid unclonability p-value | 0.0000586166 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | 10 |
Fosmid unclonability p-value | 0.521408 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCTGATTT TGACACGTCG TGTTGGCGAA ACACTGATGA TCGGTGACGA AGTCACGGTG ACAGTGCTGG GTGTAAAGGG AAATCAGGTG CGCATCGGTG TGAATGCACC TAAAGAAGTG TCTGTTCACC GCGAAGAGAT TTACCAGCGT ATTCAATCTG AAAAAACAGG TTCGCCCGAG GGCGGTAACT ACTGA
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Protein sequence | MLILTRRVGE TLMIGDEVTV TVLGVKGNQV RIGVNAPKEV SVHREEIYQR IQSEKTGSPE GGNY
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