Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sama_0973 |
Symbol | |
ID | 4603225 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella amazonensis SB2B |
Kingdom | Bacteria |
Replicon accession | NC_008700 |
Strand | + |
Start bp | 1176746 |
End bp | 1177519 |
Gene Length | 774 bp |
Protein Length | 257 aa |
Translation table | 11 |
GC content | 55% |
IMG OID | 639780312 |
Product | deoxyribose-phosphate aldolase |
Protein accession | YP_926850 |
Protein GI | 119774110 |
COG category | [F] Nucleotide transport and metabolism |
COG ID | [COG0274] Deoxyribose-phosphate aldolase |
TIGRFAM ID | [TIGR00126] deoxyribose-phosphate aldolase [TIGR00148] UbiD family decarboxylases |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 0.048409 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 2 |
Fosmid unclonability p-value | 0.000997229 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGAGCGATC TTAAAAAAGC AGCCCAGCGT GCCATTGAGT TGATGGACCT CACTACGCTG AACGACGACG ATACCGCTGA AAAAGTGATT GAGCTTTGCA AAAAAGCCGT TACTCCAGCT GGTCACACCG CCGCTATCTG CATCTATCCC CGTTTTATTC CCATCGCCCG CAAGACTCTG ATTGAACTCG ATGCCGAAGA CATCCAAATC GCCACTGTGA CCAACTTCCC TCACGGTAAC GACGATATCG CGATTGCTGT GCTCGAAACC CGCGCGGCCG TTGCGTACGG TGCTGATGAA GTGGACGTGG TTTTCCCATA CCGCGCCCTG ATGGAAGGCG ATGAAACCGT GGGCTTTGAG CTGGTTAAAG CTTGTAAAGA AGCCTGTGGT GACGATGTGC TTCTTAAAGT CATCATCGAG TCCGGTGAAC TGAAAGATCC AGCCCTTATC CGCAAGGCCT CTGAAATTTC TATCGATGCC GGTGCTGATT TCATCAAGAC CTCCACCGGT AAGGTCCCAG TTAACGCCAC TTTGGAAGCC GCTGAAATCA TGCTGACCGT GATTGCCGAA AAGAACCGTG CTGTAGGCTT CAAGCCAGCC GGTGGCGTGC GTGATGCCGC TGCGGCTGCC GAGTTCCTGG GGACTGCGGC TCGCATCCTT GGTGAAGACT GGGTGACCCC ACGAACCTTC CGTTTCGGTG CTTCCAGCCT GCTGTCCAGC TTGCTGCATA CACTGGAACT GGCCGATGCG CCTAAAGGTG CCCAGGGCTA CTGA
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Protein sequence | MSDLKKAAQR AIELMDLTTL NDDDTAEKVI ELCKKAVTPA GHTAAICIYP RFIPIARKTL IELDAEDIQI ATVTNFPHGN DDIAIAVLET RAAVAYGADE VDVVFPYRAL MEGDETVGFE LVKACKEACG DDVLLKVIIE SGELKDPALI RKASEISIDA GADFIKTSTG KVPVNATLEA AEIMLTVIAE KNRAVGFKPA GGVRDAAAAA EFLGTAARIL GEDWVTPRTF RFGASSLLSS LLHTLELADA PKGAQGY
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