Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sama_0931 |
Symbol | |
ID | 4603183 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella amazonensis SB2B |
Kingdom | Bacteria |
Replicon accession | NC_008700 |
Strand | + |
Start bp | 1123322 |
End bp | 1126927 |
Gene Length | 3606 bp |
Protein Length | 1201 aa |
Translation table | 11 |
GC content | 44% |
IMG OID | 639780266 |
Product | type IV pilin biogenesis protein, putative |
Protein accession | YP_926808 |
Protein GI | 119774068 |
COG category | [N] Cell motility [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG3419] Tfp pilus assembly protein, tip-associated adhesin PilY1 |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 3 |
Plasmid unclonability p-value | 0.207337 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 14 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAGTTTA ATCAAATTCT ATTTGCTGGC CTAGTTACAG CATCGGTTTT GCCAGCGCAA TCTTTTGCGG ATGATACAGA TCTCTATCTC AATCCTGCAG CAAACAATGT GCGTCCCCAA GTGCTTATTA TTTTTGATAA CTCCGGCAGT ATGGATACCA TAGTCGATGG TGTTGCGGGT GGTTACGACC CTAATTATAC ACAAGAAGAT GGAACTCTTG GTTACCCTGC CGTAGGAAGT TCAAATTCTT ATCAGGGTAG AATGATTTAT TTTACCGTTG GAACCGGTAT GGATGAATCT TCATTACCCG TGCCCGACAG TCCTTCAGAG TCTAGGCGTT TTAATGATTT TTTGAATGGC TGTAAAGCTG CGAGGGATGC GCTGAATCAG TATGGTCGTT TCACCGGTTA CATCAGAGAG TTTATTACGA AAGGCAAGGG TAATGGAACT TGGCAACCTA TTAAGGAAAA TAGCGGTGCA GAACGAAATA ATCCAATTGA TTGCTGGGAA GATATAGAAT CAGAATACAA TAGTAATAAT GATGATGGAA GCGATTATAA AACTGGCTAT CCGGTCGGAT TCCCCCGTGA CGGAGATGTG AATAATCCAT GGGGTAGTGA TCTGGATAGT GCGAAAAATC TAAACTGGAA TAATGGTGAG TTAGTAACGC TTTATACCGA TAATTATTTG CGTTGGTATA CATTGTATAA GAATGGTTCA CTGCCAGTCC CCCCTGACGG GGAAGGGCTG ACTAGGTTGG AAATAGCTAA GTCTGCAATA TCGGGTGTTA TAAGCTCTAT TCCTTCAGTG GATTTTGGTT TGGCTATTTA TAATCTGAAT TTCCCTGATG AAGGTGACAG TGATGGTGGA CGTATTGTCG CGGGTATCCG ACAGAGAACC GCTGCCGAGA AAGATACGAT GCTTAGCACT ATTAGCAACC TACCTGCGCA AACAAATACA CCACTTTGTG AAACCTTATT TGAGGCCTAT AGATATTTTT CTGGTGGCCC GATTACATTT GGTCATGCTG ATGCTGACTA CAACGGCAAG GATATTAAGT ATTCCTCTAA TAAGCCAATG TATGATGCGA GTATAGAAAA TGGTGCTAAC TATATTACGC CATTGTCTGA GTGTAATAAG GTGGCTCACA TTATTTATAT TACAGATGGC GCACCAGTTT TAGATGAAAG TGCAAATGAT TATATTAAGG AATTAGGTGG GGAGCCGTAT GAATATAAAG CGGCAAGTGG CGATCAGGAA GCGAAGGTAA GTTACCTTCC CGCATTGGCA GAATATATGT TTGCCAACGA TTTATTGCCT GATGTAGAGA ATAAACAACG CGTGGTAACT CATACGATAG GCTTTAGTTT GGGCGAAGAC TCAGAGGCAG AACCATTGCT CGTAGAAACC GCCTCACGTT CTTATTTAAT GACGTCTGAA GGAAAGAAGG TTTTTGGAAC CTACAGAAGT GCAGATGACG TAGCGGGACT TCAAGAGGCT ATCAGTAATA TTATCGATTC GATTCCGCAG ACTGGGCAAC GCTTTTCAGC GCCCGGTGTC GCTTTTAGTA ACGCAGATCC TACTAGAACT CTAGATTCAG CTTACTATGC GCTATTTCGT CCTCAGCAAA GTCCCAAATG GGCCGGTAAT CTGAAAAAAC TTAAAGTTAA TTCATCTGGA ACTTTAGTTG ATTCTACAGG CAAACCTGCA ATTGACAGTT CAGGTGGTAT TGCCGAAAGT TCTTGCAGTT TATGGAGTAA CTGTACAGGG GGCAATGACG GGAATGACGT CGTATTAGGA GGGGCTGCCC GCACGATAGT TCCTGATAGT AGAATCATCT GGAGCGATAT CGATAGCAGT GAAGATATGG ATAAGCGGAA GCTTACTGTC CAAAACGCTT CAAGTTACGT AGGTGGTGAT GACGCACTAG CGACATACCT AGGTTTGCCT AAATTAGATG TTGATTCAGA GTTAAAAGAC ACCTTCGATT GGATATATGG AAAGAATGTA GATAGAGATT CTGAAGGCGC GTTGACCTCT GAAGATTTCG CCGGTGTAAG GGGCGATATC ATGGGTGATC CGCTTCACTC TCAACCTTTG GCTATCGATT ACGGCGGTGA TGGTTCGAAC GTTCGCATTT TTGTTGGTAC GAATCATGGC GCATTGCACG CATTCAGAGA CTCAGGCTCT TCAGTCAGCG AGAGCTGGGC GTTTATGCCT TTTCAGCTTC TTCCCAACTT GGCAACTATT CGTCGAGATA GCTATTTAGC TGGCCATAGT GTCTATGGGA TTGATGGTTC ACCTGTCGCT CATATTGAAC GTAATGCTTC TGGTTTGATC ATGAAAGCTT GGTTGTTTGT CGGATTACGT CGAGGGGGGC AGTCCTATTA CGCCATTAAT ATTACCGAAC CAGACTCGCC AAAGCTTATG TGGCATATAT CCAACAGCAC CAGTGAATTC AGCAACATGG GACAAACTTG GTCTACTCCG GTGGTCACCA AAATACCAGG CTCTGAGAAG CCAGTGGTGA TTTTTGGTGG TGGATACAAC CAAGGTTATG ACTCCGGTGA TGGTTCAAAT TCTGTTGGCA GAATGGTTTA TCTTGTAGAT GCCGAGTCAG GTAGCTTACT GTATAGTTTC GGTGCCAATG GAAATACTGT ACTTACAGGT ATCGAAGACT CTATAGTTGG GTCTATTGCA ACCTTGGATA GTAATAGTGA CGGCTACACT GACCGGCTTT ATGCGGCTGA TTTGGGCGGC AATGTGTGGC GAATGGATTT GCCTTCTGCG GATAAGAGCA CATGGAGTGG ATTTAAGTTT GCAGAGTTAG GAGGAAACCT GCCCTCGACC GATCGTAGGT TCTTCTACGA GCCAAGTGTA GCGCAAACGT ATTTTACAAA TACCACTGAA GTAACTGTCA CTGACGAGTC AGGTACCACA ACTACGGTAG CGTATCAAAA TGTTCCTTAT GATGCGGTTA CATTGGGATC AGGAAATCGC GCGGATCCTT TGAGTTTAAA CGCAGAGGAT ATGTTTTTTG TATTACAGGA TAGAAACGTA GTTTCTCAAC AGTTTGGTGA TGGTGCTACT GCCATTCCAT CTCCAATAAC CTTTGGCAAT CTTTATGACG TGACTTCGGC GGCACCTTCA ACAGAGGCTG AAAACATTAC ATTTGGGACA AAGCTGGGCT GGTATTATAA TTTTGCGGTT ACTGGCGAAA AAAGCCTATC CCCGTCTGTC ATTATAAAAG GAAAAGTCTA CTTTACATCC TTTATTCCGA CCCAGCCTGC GGCAGGTCAG AATGTTTGCA GTGTGTCTTC AGTTGGACGT TTATATACCT TGGATTTACA CAAAGGATCA CGTTATAACG AGGCGTATAT TATAGATGTT TGCGATAACT GTATCCCACA GCCGCCAAAA ATCATCACCC CGCCACCTTG TGATACTGGC GAAGAGTGTT CGCCAGATGA GATATTAAAT CCACCACCGC CTGTGCTGAT AATAGGTAAA GGAAAATGTG ATGAGAATGG AGAGAATTGC AGCGGGACTG TGGATTTGGA GTCAGGTTTG ACCACGAATA AGATTTATTA CCACATTGAT GAGTAG
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Protein sequence | MKFNQILFAG LVTASVLPAQ SFADDTDLYL NPAANNVRPQ VLIIFDNSGS MDTIVDGVAG GYDPNYTQED GTLGYPAVGS SNSYQGRMIY FTVGTGMDES SLPVPDSPSE SRRFNDFLNG CKAARDALNQ YGRFTGYIRE FITKGKGNGT WQPIKENSGA ERNNPIDCWE DIESEYNSNN DDGSDYKTGY PVGFPRDGDV NNPWGSDLDS AKNLNWNNGE LVTLYTDNYL RWYTLYKNGS LPVPPDGEGL TRLEIAKSAI SGVISSIPSV DFGLAIYNLN FPDEGDSDGG RIVAGIRQRT AAEKDTMLST ISNLPAQTNT PLCETLFEAY RYFSGGPITF GHADADYNGK DIKYSSNKPM YDASIENGAN YITPLSECNK VAHIIYITDG APVLDESAND YIKELGGEPY EYKAASGDQE AKVSYLPALA EYMFANDLLP DVENKQRVVT HTIGFSLGED SEAEPLLVET ASRSYLMTSE GKKVFGTYRS ADDVAGLQEA ISNIIDSIPQ TGQRFSAPGV AFSNADPTRT LDSAYYALFR PQQSPKWAGN LKKLKVNSSG TLVDSTGKPA IDSSGGIAES SCSLWSNCTG GNDGNDVVLG GAARTIVPDS RIIWSDIDSS EDMDKRKLTV QNASSYVGGD DALATYLGLP KLDVDSELKD TFDWIYGKNV DRDSEGALTS EDFAGVRGDI MGDPLHSQPL AIDYGGDGSN VRIFVGTNHG ALHAFRDSGS SVSESWAFMP FQLLPNLATI RRDSYLAGHS VYGIDGSPVA HIERNASGLI MKAWLFVGLR RGGQSYYAIN ITEPDSPKLM WHISNSTSEF SNMGQTWSTP VVTKIPGSEK PVVIFGGGYN QGYDSGDGSN SVGRMVYLVD AESGSLLYSF GANGNTVLTG IEDSIVGSIA TLDSNSDGYT DRLYAADLGG NVWRMDLPSA DKSTWSGFKF AELGGNLPST DRRFFYEPSV AQTYFTNTTE VTVTDESGTT TTVAYQNVPY DAVTLGSGNR ADPLSLNAED MFFVLQDRNV VSQQFGDGAT AIPSPITFGN LYDVTSAAPS TEAENITFGT KLGWYYNFAV TGEKSLSPSV IIKGKVYFTS FIPTQPAAGQ NVCSVSSVGR LYTLDLHKGS RYNEAYIIDV CDNCIPQPPK IITPPPCDTG EECSPDEILN PPPPVLIIGK GKCDENGENC SGTVDLESGL TTNKIYYHID E
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