| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_0888 |
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| Symbol | |
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| ID | 4603140 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | + |
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| Start bp | 1076533 |
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| End bp | 1077906 |
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| Gene Length | 1374 bp |
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| Protein Length | 457 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 639780223 |
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| Product | signal recognition particle protein |
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| Protein accession | YP_926765 |
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| Protein GI | 119774025 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG0541] Signal recognition particle GTPase |
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| TIGRFAM ID | [TIGR00959] signal recognition particle protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.0000142989 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 9 |
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| Fosmid unclonability p-value | 0.373446 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTTTGAGA ACCTGACCGA CAGACTGTCG CGTACGCTGA AGACCATCAG CGGTCGCGGT
CGCTTAACGG AAGACAACAT TAAAGACACC CTGCGGGAAG TCCGTATGGC GCTCCTTGAG
GCCGATGTGG CCTTGCCGGT TGTCCGTGAA TTTGTGAACG CCGTTAAAGA GCGCGCAGTG
GGCCAGGACG TGGCCAAGAG CCTGACGCCC GGTCAGGTGT TTGTCAAAAT CGTTCAAAGC
GAGCTTGAAA AGGCGATGGG TGAGGCCAAC GAGGCCCTGA ATCTTGCCGC CCAGCCCCCG
GCTGTGATCA TGATGGCAGG TCTACAGGGT GCGGGTAAAA CCACCTCTGT GGCCAAGTTG
TCCAAATTCC TGCGTACCCG TCAGAAAAAA TCTGTACTGG TGGTCAGTGC CGACGTTTAC
CGCCCTGCGG CAATCAAGCA GCTCGAAACC CTGGCCAAAG AAGTGGAAGT GGAATTCTTC
CCCTCCGATG TGAGCCAAAA GCCCATCGAC ATCGCCAATG CGGCTATTTC GCACGCCAAG
CTGAAATTCA TTGATGTAGT GATCCTCGAT ACCGCGGGCC GATTGCACGT CGATGAAGCC
ATGATGGATG AAATCAAGGC ACTGCATGCA GCAGTCAAGC CTATCGAAAC GCTGTTCGTG
GTAGACGCCA TGACGGGTCA GGATGCAGCC AACACCGCCA AGGCCTTTAA CGAGGCGCTG
CCGTTGACTG GTGTGGTACT GACCAAGGTG GACGGTGATG CCCGCGGTGG TGCGGCGTTG
TCTATCCGCC ACATTACTGG CAAGCCCATT AAGTTCCTCG GTGTCGGCGA AAAGACAGAT
GCGCTGGAGC CATTCCACCC TGACCGTGTA GCCTCGCGCA TCCTTGGCAT GGGTGACGTA
CTTTCCCTGA TTGAGCAGGT AGAGCGCGGC GTTGATAAAG AAAAAGCCAT GAAGCTGGCC
TCCAAGGTCA AATCGGGTGG CAATTTCGAC CTCGAAGACT TCCGCGAGCA GCTGCAGCAG
ATGAAAAACA TGGGCGGCAT GATGGGACTG CTGGAAAAAT TGCCCGGCGT TGGTCAGCTG
CCACCGGAAG CCATGGCACA AATTCAGGAT GGTAAAATGA CCCGCCAAAT GGAGGCTATT
ATTAACTCCA TGACACCGGG CGAACGTCAG AATCCTGATA TCATCAAGGG CTCCCGCAAG
CGTCGCATTG CAGCGGGTAG TGGCACACAA ATTCAAGACG TTAACCGTCT GCTTAAGCAG
TTCACCCAGA TGCAGAAAAT GATGAAGAAG ATGTCTTCCA AGGGTGGAAT GCAGAAAATG
ATGCGCGCCA TGGGTGGTAT GATGCCCGGC GGCATGAAGC TTCCCGGGCG TTAA
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| Protein sequence | MFENLTDRLS RTLKTISGRG RLTEDNIKDT LREVRMALLE ADVALPVVRE FVNAVKERAV
GQDVAKSLTP GQVFVKIVQS ELEKAMGEAN EALNLAAQPP AVIMMAGLQG AGKTTSVAKL
SKFLRTRQKK SVLVVSADVY RPAAIKQLET LAKEVEVEFF PSDVSQKPID IANAAISHAK
LKFIDVVILD TAGRLHVDEA MMDEIKALHA AVKPIETLFV VDAMTGQDAA NTAKAFNEAL
PLTGVVLTKV DGDARGGAAL SIRHITGKPI KFLGVGEKTD ALEPFHPDRV ASRILGMGDV
LSLIEQVERG VDKEKAMKLA SKVKSGGNFD LEDFREQLQQ MKNMGGMMGL LEKLPGVGQL
PPEAMAQIQD GKMTRQMEAI INSMTPGERQ NPDIIKGSRK RRIAAGSGTQ IQDVNRLLKQ
FTQMQKMMKK MSSKGGMQKM MRAMGGMMPG GMKLPGR
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