| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_0874 |
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| Symbol | |
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| ID | 4603126 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | + |
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| Start bp | 1064144 |
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| End bp | 1064722 |
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| Gene Length | 579 bp |
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| Protein Length | 192 aa |
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| Translation table | 11 |
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| GC content | 53% |
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| IMG OID | 639780209 |
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| Product | RNA polymerase sigma factor RpoE |
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| Protein accession | YP_926751 |
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| Protein GI | 119774011 |
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| COG category | [K] Transcription |
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| COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
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| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family
[TIGR02939] RNA polymerase sigma factor RpoE |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 0.145718 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 7 |
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| Fosmid unclonability p-value | 0.11667 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGAGTGGAC AAAAAAGCGA TCAAGAGCTC GTAGAGCTGG TGCAGCAGGG AGATAAAAAC
GCATTCAACC TTCTGGTGCT CCGTTACCAG AGCAGGGTGA TTAACCTGAT TTCCCGTTAT
GTGCGCAATC AGGCCGATGT GGCCGATGTA GCACAGGAAG CCTTTATCAA GGCTTATCGG
GCGCTGGCTA ATTTCCGCGG CGAGAGTGCG TTTTACACCT GGCTGTACCG CATCGCGGTC
AACACGGCAA AAAATTATCT GGTATCCCAG GGCCGCAGAG CGCCGGCCAA CGATGTCGAT
GCCGATGATG CCGAGTACTA TGACGGCAGT GATGCATTAA AAGAGTTTGC CTCGCCGGAG
CGACTGATGT TGTCTGACGA AATCAAACGT GTGGTGTTTG AGACGTTGGA AGAGTTGCCC
GAAGAGCTAA AGATGGCCAT TTCCCTGCGT GAGCTCGATG GTATGAGCTA CGAAGATATC
GCCAACGTGA TGGAATGCCC TGTGGGCACT GTGCGTTCGC GGATTTTCAG AGCACGGGAA
GTGATAGACA GGAAGCTGCA GCCGCTGCTG GAGTCCTGA
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| Protein sequence | MSGQKSDQEL VELVQQGDKN AFNLLVLRYQ SRVINLISRY VRNQADVADV AQEAFIKAYR
ALANFRGESA FYTWLYRIAV NTAKNYLVSQ GRRAPANDVD ADDAEYYDGS DALKEFASPE
RLMLSDEIKR VVFETLEELP EELKMAISLR ELDGMSYEDI ANVMECPVGT VRSRIFRARE
VIDRKLQPLL ES
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