Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sama_0827 |
Symbol | |
ID | 4603079 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella amazonensis SB2B |
Kingdom | Bacteria |
Replicon accession | NC_008700 |
Strand | + |
Start bp | 1011529 |
End bp | 1012542 |
Gene Length | 1014 bp |
Protein Length | 337 aa |
Translation table | 11 |
GC content | 57% |
IMG OID | 639780162 |
Product | putative DNA-binding/iron metalloprotein/AP endonuclease |
Protein accession | YP_926704 |
Protein GI | 119773964 |
COG category | [O] Posttranslational modification, protein turnover, chaperones |
COG ID | [COG0533] Metal-dependent proteases with possible chaperone activity |
TIGRFAM ID | [TIGR00329] metallohydrolase, glycoprotease/Kae1 family |
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Plasmid Coverage information |
Num covering plasmid clones | 2 |
Plasmid unclonability p-value | 0.00000342957 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | 13 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCGGGTTT TGGGAATCGA GACGTCCTGT GATGAAACAG GCATCGCCAT CTACGACGAA GAGAAAGGCC TGATGGCCCA CACTCTGTAC AGCCAGGTCA AACTGCACGC CGATTACGGT GGGGTTGTGC CTGAGCTGGC TTCCCGTGAC CATGTGCGTA AGATTATTCC GCTTATTCGC GAAGCCCTGA AAAATGCCGA TACCCGTATC GAAGATCTGG ATGGGATCTG CTACACCAAG GGCCCCGGTC TGATTGGTGC GCTGCTGGTT GGCGCCTGTG TAGGCCGCTC GTTGGCGTTT TCCTGGAATC TGCCCGCCGT GGGTGTGCAC CATATGGAAG GCCATTTGCT GGCACCGATG CTCGAAGACG AGGTGCCTGA GTTCCCCTTT GTGGCGCTGC TGGTTTCCGG TGGTCATTCT ATGCTGGTGA AAGTAGATGG TATAGGCCAG TACGAGGTGC TTGGTGAGTC CATCGATGAT GCCGCCGGAG AGGCCTTCGA TAAAACGGCC AAGCTGATGG GGCTTGATTA TCCGGGCGGT CCGCGTCTTG CCAAGCTCGC GGCCTCGGGT CAGCCAGCCA ACTACAAGTT TCCGCGCCCA ATGACCGACA GACCCGGGCT GGACTTCAGT TTCTCCGGGC TTAAAACCTT CGTAGCCAAT ACTATCGCTG CCGAACCGGA TGATGAGCAG ACCCGCGCCA ATATCGCCCG TGCTTTCGAA GAGGCGGTGG TGGATACCCT GTCTATCAAG TGTCGCCGAG CACTGGAGCA AACCGGTTAC AAACGCCTTG TTATTGCCGG TGGTGTGAGT GCCAACGTGC GCCTGCGCGC AGGTCTTGCA GAGCTGATGG AAAAACTGGG TGGCAAGGTG TACTACCCCC GAGGGGAATT CTGTACCGAC AATGGTGCCA TGATTGCCTA TGCCGGTTTG CAGAGGCTGA AAGCGGGACA GCTTGAAGAT TTGGCAGTAA AAGGTCAGCC TCGATGGCCA CTGGATACCT TGCTACCGGT GTGA
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Protein sequence | MRVLGIETSC DETGIAIYDE EKGLMAHTLY SQVKLHADYG GVVPELASRD HVRKIIPLIR EALKNADTRI EDLDGICYTK GPGLIGALLV GACVGRSLAF SWNLPAVGVH HMEGHLLAPM LEDEVPEFPF VALLVSGGHS MLVKVDGIGQ YEVLGESIDD AAGEAFDKTA KLMGLDYPGG PRLAKLAASG QPANYKFPRP MTDRPGLDFS FSGLKTFVAN TIAAEPDDEQ TRANIARAFE EAVVDTLSIK CRRALEQTGY KRLVIAGGVS ANVRLRAGLA ELMEKLGGKV YYPRGEFCTD NGAMIAYAGL QRLKAGQLED LAVKGQPRWP LDTLLPV
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