| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_0823 |
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| Symbol | |
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| ID | 4605933 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | - |
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| Start bp | 1006839 |
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| End bp | 1008701 |
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| Gene Length | 1863 bp |
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| Protein Length | 620 aa |
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| Translation table | 11 |
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| GC content | 53% |
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| IMG OID | 639780158 |
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| Product | RNA polymerase sigma-70 factor |
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| Protein accession | YP_926700 |
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| Protein GI | 119773960 |
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| COG category | [K] Transcription |
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| COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
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| TIGRFAM ID | [TIGR02393] RNA polymerase sigma factor RpoD, C-terminal domain
[TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.0655826 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATATCTA TGGATCATAC TCCGCAGTCG CAACTAAAGA TGTTGCTCGC CAAAGGTAAA
GAGCAAGGTT ACTTAACCTA TGCAGAAGTG AACGATCACT TGCCTGCAGA TATGGTCGAC
TCTGACCAGA TCGAAGATAT TATCCAGATG ATCAATGACA TGGGTATCCG CGTTTATGAA
GAAGCGCCCG ATGCCGATGA AATGATGATG TCCGAAGACA ACACGGACGA AGATGCCGCC
GAAGAAGCAG CGGCTGCGCT GGCCACAGTA GAAAGCGAAC TTGGCCGCAC CACTGACCCG
GTACGCATGT ACATGCGTGA AATGGGTACT GTTGAGCTGC TCACCCGTGA AGGCGAAATC
GTTATCGCCA AGCGTATCGA AGAAGGCATC AACACTGTTC AAAGCTCTGT GGCTGAATAT
CCACAAGCTA TCTCCATGAT CCTGGAGCAA TTCGACCAGT TCGAAGCAGA CGCCATTCGT
CTGTCTGATA TCATTTCCGG CTTTGTGGAC CCCAACGAAG AAGACGTTGG CCCCACCGCG
ACCCATATTG GTTCCGAGCT TTCAGAAGAA GAGCTCGAGG ACGAAGACGA TATGGACGAA
GACGAAGAGG AAGACGAAGA CGGCGACAGC AGCGATGACG ACGGCGCCAA GGGCCCGGAT
CCGGAAGTCG CCCGTGAACG CTTTGCCGCA CTGCGCGCCG CCTATGACAA TGCACTGAAA
GTCATTGAAG TCAAAGGTCG TGCTCATCCC GAGTCTACCC GCGCCCTGTT TGAACTCGGT
GAAATCTTCA AAGAATTCCG TCTGGTGCCC AAGCAGTTTG ACCGTCTGGT CAAGAGCATG
CGCGAGATGA TGGACAAGGT TCGTGTTCAG GAACGTCTGA TCATGAAACT GTGCGTTGAA
CAGGCCAAGA TGCCGAAGAA AAACTTCGTC AAGCTTTTCA CCGGTAATGA AACCGATCTG
ACCTGGTTCA ACAAAGAAAT TGAAGCCGGA CGCCCCTACT CTGCCGATCT CAAGTTGGTG
GACGAAGACG TTCAGCGTTG CCGCGCCAAG CTTGAAGCCA TTGAAGTGGA AACCGGTTTG
TCCATTGAAT CCATCAAGGA TATTAACCGC CGCATGAGCA TCGGTGAAGC CAAGGCTCGC
CGTGCCAAAA AAGAAATGGT TGAGGCCAAC TTGCGTCTGG TAATTTCTAT CGCCAAGAAA
TACACCAACC GCGGCCTGCA ATTCCTGGAT CTCATCCAGG AAGGTAATAT CGGCCTGATG
AAGGCGGTGG ACAAGTTTGA ATACCGTCGC GGTTACAAGT TCTCGACCTA CGCGACCTGG
TGGATCCGTC AGGCCATCAC CCGCTCTATC GCGGATCAGG CCCGTACCAT CCGTATTCCG
GTGCATATGA TTGAGACCAT TAACAAACTC AACCGTATCA GCCGCCAGAT GCTGCAGGAA
ATGGGTCGCG AACCCTCACC TGAAGAACTG GCTGAGCGCA TGGCCATGCC CGAGGACAAG
ATCCGTAAGG TACTGAAAAT TGCCAAAGAG CCTATCTCCA TGGAAACCCC AATCGGTGAC
GATGAAGATT CGCATCTGGG GGATTTCATC GAGGACACCA CCCTCGAGCT GCCACTGGAC
AGCGCCACCA GCGAGAGCCT CAAGCAGGCT ACCCACGAAG TGCTTGCCGG TTTGACTGCC
CGTGAGGCCA AGGTACTGCG CATGCGCTTT GGTATCGACA TGAACACCGA CCACACCCTC
GAGGAAGTGG GCAAGCAGTT CGATGTTACC CGTGAGCGTA TCCGTCAGAT TGAGGCCAAG
GCACTGCGCA AACTGCGCCA CCCAAGCCGC TCGGAAATCC TCAAGTCATT CCTGGATGAT
TAA
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| Protein sequence | MISMDHTPQS QLKMLLAKGK EQGYLTYAEV NDHLPADMVD SDQIEDIIQM INDMGIRVYE
EAPDADEMMM SEDNTDEDAA EEAAAALATV ESELGRTTDP VRMYMREMGT VELLTREGEI
VIAKRIEEGI NTVQSSVAEY PQAISMILEQ FDQFEADAIR LSDIISGFVD PNEEDVGPTA
THIGSELSEE ELEDEDDMDE DEEEDEDGDS SDDDGAKGPD PEVARERFAA LRAAYDNALK
VIEVKGRAHP ESTRALFELG EIFKEFRLVP KQFDRLVKSM REMMDKVRVQ ERLIMKLCVE
QAKMPKKNFV KLFTGNETDL TWFNKEIEAG RPYSADLKLV DEDVQRCRAK LEAIEVETGL
SIESIKDINR RMSIGEAKAR RAKKEMVEAN LRLVISIAKK YTNRGLQFLD LIQEGNIGLM
KAVDKFEYRR GYKFSTYATW WIRQAITRSI ADQARTIRIP VHMIETINKL NRISRQMLQE
MGREPSPEEL AERMAMPEDK IRKVLKIAKE PISMETPIGD DEDSHLGDFI EDTTLELPLD
SATSESLKQA THEVLAGLTA REAKVLRMRF GIDMNTDHTL EEVGKQFDVT RERIRQIEAK
ALRKLRHPSR SEILKSFLDD
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