| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_0790 |
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| Symbol | valS |
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| ID | 4603042 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | - |
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| Start bp | 973085 |
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| End bp | 975946 |
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| Gene Length | 2862 bp |
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| Protein Length | 953 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 639780124 |
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| Product | valyl-tRNA synthetase |
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| Protein accession | YP_926667 |
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| Protein GI | 119773927 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0525] Valyl-tRNA synthetase |
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| TIGRFAM ID | [TIGR00422] valyl-tRNA synthetase |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGAAAAGA CATACAATCC ACAGTCCATC GAACAGGCCC TCTACCGCGT TTGGGAAGAA
AAGGGTTACT TCAAGCCACA CGGTGATGCC AGCCAGGGCA ACTACTGCAT CATGATCCCA
CCGCCGAACG TCACCGGCAG CCTGCACATG GGTCACGCCT TCCAGGACAC CATCATGGAT
ACCCTCATCC GCTATCAGCG CATGAAGGGC AAAAACACCC TGTGGCAAGT AGGTACCGAC
CATGCTGGTA TCGCCACCCA GATGCTGGTT GAGCGTAAGC TGGAAGCCGA ACAGGGCAAG
AGCCGCCACG ATCTCGGCCG CGACGCCTTT ATGGAAAAGG TTTGGGAGTG GAAAGCCCAG
TCCGGCGGTA CCATCACCAG CCAGCTGCGC CGCATGGGCG CCTCCGTGGA TTGGGACCGT
GAGCGCTTCA CCATGGATGA AGGCCTGTCC AACGCCGTGC AGGAAGTGTT CGTGCGCCTG
TACGACGACA AACTGATTTA CCGCGGCAAG CGCCTCGTAA ACTGGGATCC CAAGCTGCAC
ACTGCCATTT CCGATCTGGA AGTGGAAAAC AAAGAAAAAG CGGGCCACAT GTGGCACTTC
CGCTATCCAC TGGCCGGCAC CGAGCTGACC GCCGATGGCA AAGACTATCT GGTAGTAGCC
ACTACCCGCC CTGAAACCAT GCTGGGCGAC AGCGCGGTTG CGGTACACCC CGAAGATGAG
CGTTATGCGT CACTGATTGG CAAAGAAATC ATTCTGCCTA TCGTGAACCG CCGCATCCCC
ATCATCGCCG ATGAATACGT GGATAAAGAC TTCGGTACCG GCTGCGTGAA AATCACCCCG
GCCCACGACT TCAACGACTA CGAAGTGGGC AAGCGCCACA GCCTGCCGAT GTTCAACATC
CTCACTCAGG ATGCCACCAT CCGTGCCCTG GCCGAGGTAC TGAACACCGA CGGCAGCCAC
AACAGCGAGC TGGATGCCAG CCTGCCTGAG CGCTATGCCG GCCTCGACCG CTTCAAGGCC
CGTGACGCCA TCGTGGCCGA GTTTGAGACT CTGGGTCTCT TGGAAAAAAT CGAGCCACAC
GCCCTCAAGG TGCCTTATGG CGATCGCTCC GGCGTCGTGA TTGAGCCGCT GCTTACTGAT
CAGTGGTACG TTGCGGTGCA GAAACTCGCT CAGCCTGCCA TCGAAGCGGT GGAAAACGGC
GACATCAAGT TTGTGCCTCA GCAATACGAA AACATGTACT TCTCCTGGAT GCGTGACATT
CAGGACTGGT GTATCTCCCG TCAGCTGTGG TGGGGTCACC GCATTCCTGC GTGGTACGAC
GAAGCCGGTA AGGTGTACGT TGGCCGCAGC GAAGATGAAG TGCGCCAGAA CCATAACCTC
GGCAGCGATG TGAAACTGCG TCAGGATGAC GATGTACTGG ACACCTGGTT CTCCTCTGCC
CTGTGGACTT TCTCAACCCT GGGCTGGCCG GAACAAACCC CAGAGCTCAA GACCTTCCAC
CCCACCGACG TACTGGTGAC AGGTTTTGAT ATCATCTTCT TCTGGGTTGC CCGGATGATC
ATGATGACCA TGTACTTCAT CAAAGACGAA GACGGCAAGC CGCAGGTACC ATTCAAGACG
GTTTACGTCA CCGGTCTTAT CCGCGACGAA GCTGGCAACA AGATGTCCAA GTCCAAGGGT
AACGTCCTCG ACCCGCTGGA TATGATTGAC GGTATCGACC TTGAATCTCT GGTTCAGAAG
CGTACCGGCA ACATGATGCA ACCACAGCTT GCCGCCAAGA TAGAAAAGAG CACCCGCAAG
GAGTTCGAAA ACGGCATCGA GCCACACGGC ACAGACGCGC TGCGCTTTAC CCTGGCGGCC
ATGGCCTCTA CCGGCCGTGA CATCAACTGG GACATGAAGC GCCTCGACGG TTACCGCAGC
TTCTGTAACA AGCTGTGGAA CGCCTCTCGC TACGTGCTGA TGAACACCGA AGAGCAGGAT
TGTGGCCAAG GCGGTGGTGA TATGAAGCTG TCGCTGGCCG ACCGCTGGGT CATCGGCAAG
TTCCAGGAAA CCGTCAAAGC CTTCGACGAG CACATCAATG CCTATCGTTT TGACCTGGCC
GCCAACACCC TGTACGAGTT CACCTGGAAC CAGTTCTGTG ACTGGTATCT GGAGCTGACC
AAGCCAGTAC TGCAAAACGG CTCTGAAGCC GAGCAGCGCG GCACCCGTCA TACCCTGGTG
ACTGTACTTG AGCAGCTGCT GCGCCTGATG CACCCCATGA TGCCGTACAT CACCGAGACC
ATCTGGGATC GCGTGAAGCC CTTGGCAGGT GTTGAGGGTG ACACCCTGAT GCTGATGTCC
TTCCCCGAGT TCGATGCCGC CAAGGTAGAT GCCAAGGCCA TGGCCGATCT CGAATGGGTC
AAGCAGGTGA TTGTGGCCGT GCGTAACATT CGCGCCGAGC TCAACATCGC GCCAAGCAAG
CCGTTGTCAG CCCTGCTGCG CGGTGTAAGC GATGAAGACA AGGCCCGCAT CGAAGCCAAC
CAGGCCTTCT TCGGCACGCT TGCCAAGCTT GAGAGCATGA CCATTCTCGC CGAAGGCGAA
GCCGCCCCCA TGGCCACCAC TCAGCTGATT GGTGAAATGG AACTGCTTAT TCCTATGGCA
GGCCTGATTG ACGTTGCCGC CGAGATGGCC CGTATCGACA AGCAGCTGGA GAAGCTGACT
GGCGAAGTGG CCCGCATCGA AGGCAAGCTG TCCAACCAAG GCTTTGTGGC CAAGGCCCCG
GCTGAAGTGA TTGAGAAAGA GCGCGCCAAG GCCGCCGACA TCAAGCGCGA CATGGACAAA
CTGACCGAGC AGAAAGCCGA GCTTGCGAAA CTTGAAGCCT GA
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| Protein sequence | MEKTYNPQSI EQALYRVWEE KGYFKPHGDA SQGNYCIMIP PPNVTGSLHM GHAFQDTIMD
TLIRYQRMKG KNTLWQVGTD HAGIATQMLV ERKLEAEQGK SRHDLGRDAF MEKVWEWKAQ
SGGTITSQLR RMGASVDWDR ERFTMDEGLS NAVQEVFVRL YDDKLIYRGK RLVNWDPKLH
TAISDLEVEN KEKAGHMWHF RYPLAGTELT ADGKDYLVVA TTRPETMLGD SAVAVHPEDE
RYASLIGKEI ILPIVNRRIP IIADEYVDKD FGTGCVKITP AHDFNDYEVG KRHSLPMFNI
LTQDATIRAL AEVLNTDGSH NSELDASLPE RYAGLDRFKA RDAIVAEFET LGLLEKIEPH
ALKVPYGDRS GVVIEPLLTD QWYVAVQKLA QPAIEAVENG DIKFVPQQYE NMYFSWMRDI
QDWCISRQLW WGHRIPAWYD EAGKVYVGRS EDEVRQNHNL GSDVKLRQDD DVLDTWFSSA
LWTFSTLGWP EQTPELKTFH PTDVLVTGFD IIFFWVARMI MMTMYFIKDE DGKPQVPFKT
VYVTGLIRDE AGNKMSKSKG NVLDPLDMID GIDLESLVQK RTGNMMQPQL AAKIEKSTRK
EFENGIEPHG TDALRFTLAA MASTGRDINW DMKRLDGYRS FCNKLWNASR YVLMNTEEQD
CGQGGGDMKL SLADRWVIGK FQETVKAFDE HINAYRFDLA ANTLYEFTWN QFCDWYLELT
KPVLQNGSEA EQRGTRHTLV TVLEQLLRLM HPMMPYITET IWDRVKPLAG VEGDTLMLMS
FPEFDAAKVD AKAMADLEWV KQVIVAVRNI RAELNIAPSK PLSALLRGVS DEDKARIEAN
QAFFGTLAKL ESMTILAEGE AAPMATTQLI GEMELLIPMA GLIDVAAEMA RIDKQLEKLT
GEVARIEGKL SNQGFVAKAP AEVIEKERAK AADIKRDMDK LTEQKAELAK LEA
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