Gene Sama_0778 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSama_0778 
Symbol 
ID4603030 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella amazonensis SB2B 
KingdomBacteria 
Replicon accessionNC_008700 
Strand
Start bp960154 
End bp961428 
Gene Length1275 bp 
Protein Length424 aa 
Translation table11 
GC content59% 
IMG OID639780112 
ProducttRNA nucleotidyltransferase (CCA-adding enzyme) 
Protein accessionYP_926655 
Protein GI119773915 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0617] tRNA nucleotidyltransferase/poly(A) polymerase 
TIGRFAM ID[TIGR01942] poly(A) polymerase 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0000000683144 
Plasmid hitchhikingNo 
Plasmid clonabilityunclonable 
 

Fosmid Coverage information

Num covering fosmid clones15 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGCTTTATC GCCTGAACAA GGCCGGTTAC GAGGCCTTTT TGGTGGGTGG CGGTGTACGC 
GATCTGCTGC TGGGCCTGGA GCCGAAAGAC TTTGACGTGG TGACCAACGC CACCCCCGAA
GACATCAAAA AGTTGTTCCG CAACTGCCGC CTGGTGGGTC GCCGTTTCCG TTTGGCCCAC
ATCGTATTTG GCCGTGACGT GATTGAAGTA GCGACCTTCC GTGGTCATCA CGGCAATGAG
GATGGCGACA AGATTTCCAA GGCCAACGCC GAGGGACGCC TGCTGCGGGA CAACGTGTAC
GGCAGCATCG ATGAAGACGC CGAACGCCGC GACTTTACCG TAAACGCCCT CTACTACGAC
ATCAGCGATT ACTCTATCCG CAGCTACGGC GGCGGTATGG AAGATCTCAA CGACGGTGTA
TTGCGCCTGA TTGGCGATCC TGAGACCCGC TACCGCGAAG ACCCGGTGCG GATGATCCGC
GCCGTGCGCT TTGCCACCAA GCTGGGCATG CGCATCGAAG AGGTAACAGC CGCGCCAATC
CGCAAACTGG CACCGCTGCT GCGCGATATT CCGGCCGCCC GCATGTACGA AGAAGTGCTC
AAGCTGTTTT TTGCGGGCAA GGGTCAGGCA AACTATCAGA TGATGCAGGA ATATCAGCTA
TTTGCGCCGA TTTTCCCGCT GCTGGCCGAC ACCATTGCCG ACTCACCAAA GGGCCACTGT
GCCCGTATGG TGAACCTGGT GATGCGCAAT ACCGATATCC GGGTCATGGA AGACAAGCCA
GTCACACCGG CCTTCTTCTA TGCGGCCCTG CTGTGGTATC CGCTGAAAAG CCGCGCCGAA
GAAATTGCCA ACGAGAGTGG CCTCAGTCTG TACGATGCCT ATTTTGCCGC CATGGGCGAT
GTGCTCGAGC AGCAATGCCA GACCATTTCG CTGCCCAAGC GCTTCAGTGT TCCGGCTCGG
GATATCTGGC AGATGCAGCT CAGATTTGAG CGCAGCCAGG GTACCCGCGC CTTTAAACTG
ATGGAAAGCC CCAAGTTCCG CGCCGGTTAT GATTTGCTGT TGATGCGCGC CGAAATAGAG
GGTGGCAATC TGCAAAAGAC CGCCAGCTGG TGGCAGTCGT TTGTAGAAGC GCCGGAAGAA
GAACGTGGCA ATATCGCCCG CGGCGGTGCC AAGAGTGATG CTCCCCGCAA CCGCAAACGC
CGCGTTCGCC GTCGCCCCCG CAGTGAAGGT GGCAGTGGCG AAGGAGCCAA GGCAAACACC
GGCAGCGACA GCTGA
 
Protein sequence
MLYRLNKAGY EAFLVGGGVR DLLLGLEPKD FDVVTNATPE DIKKLFRNCR LVGRRFRLAH 
IVFGRDVIEV ATFRGHHGNE DGDKISKANA EGRLLRDNVY GSIDEDAERR DFTVNALYYD
ISDYSIRSYG GGMEDLNDGV LRLIGDPETR YREDPVRMIR AVRFATKLGM RIEEVTAAPI
RKLAPLLRDI PAARMYEEVL KLFFAGKGQA NYQMMQEYQL FAPIFPLLAD TIADSPKGHC
ARMVNLVMRN TDIRVMEDKP VTPAFFYAAL LWYPLKSRAE EIANESGLSL YDAYFAAMGD
VLEQQCQTIS LPKRFSVPAR DIWQMQLRFE RSQGTRAFKL MESPKFRAGY DLLLMRAEIE
GGNLQKTASW WQSFVEAPEE ERGNIARGGA KSDAPRNRKR RVRRRPRSEG GSGEGAKANT
GSDS