Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sama_0583 |
Symbol | |
ID | 4602836 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella amazonensis SB2B |
Kingdom | Bacteria |
Replicon accession | NC_008700 |
Strand | + |
Start bp | 727391 |
End bp | 728977 |
Gene Length | 1587 bp |
Protein Length | 528 aa |
Translation table | 11 |
GC content | 51% |
IMG OID | 639779918 |
Product | diguanylate cyclase |
Protein accession | YP_926461 |
Protein GI | 119773721 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG2199] FOG: GGDEF domain |
TIGRFAM ID | [TIGR00229] PAS domain S-box [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
Num covering plasmid clones | 4 |
Plasmid unclonability p-value | 0.00179643 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | 3 |
Fosmid unclonability p-value | 0.00349282 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | TTGATCCCTA ATCGCCAGAA GCTTTATGTC AAAGTTGCTG TTGCCATCGC GGTGGGAGCC TTTCTCGCGG CAGTGGTCGC CTGCCTCTAT TTTTTCTGGG ATGCGCGGGA AACCAAACTC AGGGAAGTCA AAAACCAACT TGGACAAATT GCCTTAACGG TGCAAAAAAC TGCCTCAGTT GCCCTCTATG TCAAGGACGT GGAGCTGGGT AAAGAAATCG TTGAGGGTCT TGAGGTCAAT GATCTGGTGG CCGGCGCTTT GCTCACCGCA GACAGCGGTG ACTGGGTGAG TTCCAGCGGT TTTGCCGCAG ATGACTTACT GCAGGTGCTG GAATTTGACA TTCCCCATCC TTTTTTTGCC GGTGAGGTGC TGGGCAAGCT CAAGTTGCTG CCAAACAACG AATACATTCA ATCAAGGGCC ACTGAGGTTG CACTCAAACA AGCTTGGATG TTGGTGCTTC AATCGGCATT GATTGCACTG CTTGTTTCCC TGTTGGTGCA TAAAACCCTG ACAGCGCCGT TAAATCGCCT GACCTCGAAC TTTGAGAATA TTAAGCCCGG TGACAATGAC CCGCTCAACG TGCCCAAATA CCATGCTCAG GACGAAATAG GCAGCCTGGT GCGGGGTATC AATCAGCTGG TGGCCAACCT GAATCAATCT ATCGAAAAAG AGCGGAGCTT GCGGCAAAGG ACAGAGCTGT TGGAGCGTAA ATTCCGGCTC ATTTTTGAAA GGGCTACCGC CGGTATTTGC CTGATAGACC CCGGCAATCA TGTGCTCGTT GCCAACGAGG CATTCCAGCG TCTGTGTGGC ACTGAATCCA TAGATAACCA ACCAGCCCTC AGCCACTGGT TTGAAGAAGA AGCCGAATTA GCGCGTTTTT TCGATGAACT CAGGGGGAAT GCAAATCTCA ATCACGTTGA GATGGAGCTG CAGCTGCGCA GTCAGCAAAG CGCGCAGCTC AAATGGGTTC ACTGCCTGTT TTCCAAAGTG GAAGACCGCA CTCAGACGCT AATTGAAGTG ATGATGTATG ACATCACTGA ACGCACATAC AGGGAACGGA TGATTCGGTT TGAAGCCGAG CATGACCCCT TGACCCAGCT TAAGAATCGC CGCTCAGGTG AACGCCTGTT GGTTGATATG ATGCGAAAAG TCGATCAAAC CAGGACACTG ATGGGCGTGC TGCTGATTGA TTTGGATAAA TTCAAACCTG TGAATGATAT CTACGGTCAT GAAGCCGGTG ATTCGGTATT GAAAACCGTC GCCGAACGCC TTGTGAAGCT GGTCGGCGAT GGAATTGCTA TCCGTTGGGG CGGCGATGAG TTTCTGATTG GCATTACCGA CGTTGATGAG GATTACAACA AGCTGCGTCT ACTTGCCCAG GAAATATTGG TTCAGGTATC CAGGCCGATA GCTATTCGCG GCAGTCTTTC CTGCGAAGTG GACGCCAGTG TGGGGATTGC CATTTATCCC CACCACGGCC ATACCCTGGA GGCGCTGCTT GAGGCCGCAG ACGTTGCCAT GTATGAGGTC AAAGAGCAGG GGCGGGGGAG TTTTCGTATT GGCAGGATTT CTTCCGGTGC TGCCTGA
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Protein sequence | MIPNRQKLYV KVAVAIAVGA FLAAVVACLY FFWDARETKL REVKNQLGQI ALTVQKTASV ALYVKDVELG KEIVEGLEVN DLVAGALLTA DSGDWVSSSG FAADDLLQVL EFDIPHPFFA GEVLGKLKLL PNNEYIQSRA TEVALKQAWM LVLQSALIAL LVSLLVHKTL TAPLNRLTSN FENIKPGDND PLNVPKYHAQ DEIGSLVRGI NQLVANLNQS IEKERSLRQR TELLERKFRL IFERATAGIC LIDPGNHVLV ANEAFQRLCG TESIDNQPAL SHWFEEEAEL ARFFDELRGN ANLNHVEMEL QLRSQQSAQL KWVHCLFSKV EDRTQTLIEV MMYDITERTY RERMIRFEAE HDPLTQLKNR RSGERLLVDM MRKVDQTRTL MGVLLIDLDK FKPVNDIYGH EAGDSVLKTV AERLVKLVGD GIAIRWGGDE FLIGITDVDE DYNKLRLLAQ EILVQVSRPI AIRGSLSCEV DASVGIAIYP HHGHTLEALL EAADVAMYEV KEQGRGSFRI GRISSGAA
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