| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_0552 |
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| Symbol | |
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| ID | 4602807 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | + |
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| Start bp | 678644 |
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| End bp | 680590 |
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| Gene Length | 1947 bp |
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| Protein Length | 648 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 639779888 |
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| Product | putative methyl-accepting chemotaxis sensory transducer |
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| Protein accession | YP_926432 |
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| Protein GI | 119773692 |
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| COG category | [N] Cell motility
[T] Signal transduction mechanisms |
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| COG ID | [COG0840] Methyl-accepting chemotaxis protein |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.283806 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 3 |
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| Fosmid unclonability p-value | 0.00439756 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | decreased coverage |
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Sequence |
| Gene sequence | ATGATGTTCA ATCTCAGTCG ATTAAAGATT AAGACCGTGG TTGCTGTTGG TATGGCCGGT
GCGCTGTTTT GTTCCATGCT GTTTTCAACT CTGATTTATA TCGGTCAATT TTCGCAGATG
TTTTACAGCC AGACTGAAGA GGGGCTTTTA CCAGCTCAGC TTGGTAAGGC AAGTGCCGAA
ATTGATACCG AGTTGACCAA ATATCTCACT TTGTCGGAAG ACTTAGCCAG TAATCACTTT
ATTAATCTCT GGCAGCAACA AGGTGAACCT GAAGGTGGTC GAGGAGATAT TGTCCAATTT
CTTAAAGGCT ATCTGAATCA GCAGGGCGTC TTGGCTGCTT TTTGGATTTC CGTTGCCAGT
GGAAACTACT ATACCAACGA AGGTATTGTT AAGACGCTAT CACGGCAAAG CAATCGTGAT
CAGTGGTTTT ATGAGTTTCT GAGTCGAAAT AATGACATGG AAGCGGCATT AGACACCGAC
GAGACCCTGG GGAAATTGAC GGTTTACATC AATATTTCAG TGCGTGATAC CACAGGTAAA
ATTGTGGCCG TTGCGGGTAT TGGCGTGGAT GCTTCCAAAA TTTCCGATAT TGTCACTCGC
GCCAGCATGG GCGAATCCGG TTACATGTTC ATGCTCAATG AGCATGGTAA TTTTGCCGCT
CACAAAGACA GAACGTTGCT GAATCGTTCG CTGTCGCAAA TGACCGACTA TCTCCCGGTA
CAGAACACGC TGAACGGAAA TGCTTCTGGA GAGAGAATTC TTTCGGCTGA ACTGAAGGGG
GAGGAGGTTT ATATAGGTGT CGTTTACCTC CCTAAGATGA AGTGGAATTT GGTGGGCATC
ATGCCCAAAG CGGAAATCAG TAGTCAGATA AACCAAGTAA TAGGCATTTC GGTTGGGATT
AGTGTGTTGA TTGCACTCTT TTTTATATCG ATGTCATTTT TATTGGCTGG GAATGTCAGT
AAGCACATAT TGGCGATAAG TGATCGTTTG CTCAGCATGT CCAGAGATGG CGGAAATATA
CAGCAGAGGC TGGATGACGG CACTGACAAT GAAGTTGGGC AATTGGCCAA AGGCTTCAAC
GCCATCATGG GTAAAATAGG GAACCTCGTT GATGAAATTC AACAAGGTGA ACGGGCGATT
ACCGCCAGTG TTGATTTGCT GAATAGCTTG TCCCAGCAAA CGGTGACACA CGCTGAAGCC
CAGCAGCAGC AAACAGAGCA GGTCGCAACT GCCATCAACC AAATGGGTCA GACCATTGCG
GAAGTATCGT CGGTCGCCCA CCGTATAGCA GCCGATACCA GCTCGGCCGT GAGCGATGTG
CATAACACCA GCAATGTTAT GCTCAACCTG GCGGCGACCA TGGAGAAGTT GTCAGCTTCA
ATGAATGGTA CGCAATCCAC AGTGAACGAC TTGGCAACCC AGGCGGAATC AATCAATTCT
GTCGTGGAGG TGATCAGTAG CATTTCGGAG CAAACTAACC TTTTGGCACT TAATGCGGCC
ATTGAAGCAG CCCGAGCTGG TGAGATGGGA CGCGGTTTTG CCGTCGTTGC CGATGAAGTA
CGTACTCTAG CCAGTCGAAC CCAAGACTCT ACTTCCGAAA TTCGTACGCA AATAGAAAAG
CTACAACAGG CCGTAGGTCT GACTCGTCAG GCCGTTGGTG ACGCAGCCAA ACAAAGCTCG
CTTTTGGCAA CGGACGCAAT CGAAGCTACC GGAGCGCTCA AAACCGTGCA GGAAAAATTT
GATGATATTA ACCAAGGCAA TCAACAGGTT GCCGCCGCAA CGGAAGAGCA GGCAAGTGTC
GTTGATCATG TTAACGAATC TGCTCATGTC ATCGCCGATA CTGCTGGGTA CATAAATGGT
AGCGCGCTGC AATGCTTTGA TGAAATTCGT AATTTACAGG GGCAGGCAGA TAGGATGTCT
CGTTTGGTAA AACAGTTTGA ACAATGA
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| Protein sequence | MMFNLSRLKI KTVVAVGMAG ALFCSMLFST LIYIGQFSQM FYSQTEEGLL PAQLGKASAE
IDTELTKYLT LSEDLASNHF INLWQQQGEP EGGRGDIVQF LKGYLNQQGV LAAFWISVAS
GNYYTNEGIV KTLSRQSNRD QWFYEFLSRN NDMEAALDTD ETLGKLTVYI NISVRDTTGK
IVAVAGIGVD ASKISDIVTR ASMGESGYMF MLNEHGNFAA HKDRTLLNRS LSQMTDYLPV
QNTLNGNASG ERILSAELKG EEVYIGVVYL PKMKWNLVGI MPKAEISSQI NQVIGISVGI
SVLIALFFIS MSFLLAGNVS KHILAISDRL LSMSRDGGNI QQRLDDGTDN EVGQLAKGFN
AIMGKIGNLV DEIQQGERAI TASVDLLNSL SQQTVTHAEA QQQQTEQVAT AINQMGQTIA
EVSSVAHRIA ADTSSAVSDV HNTSNVMLNL AATMEKLSAS MNGTQSTVND LATQAESINS
VVEVISSISE QTNLLALNAA IEAARAGEMG RGFAVVADEV RTLASRTQDS TSEIRTQIEK
LQQAVGLTRQ AVGDAAKQSS LLATDAIEAT GALKTVQEKF DDINQGNQQV AAATEEQASV
VDHVNESAHV IADTAGYING SALQCFDEIR NLQGQADRMS RLVKQFEQ
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