| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_0530 |
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| Symbol | |
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| ID | 4602785 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | + |
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| Start bp | 653396 |
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| End bp | 654574 |
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| Gene Length | 1179 bp |
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| Protein Length | 392 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | 639779866 |
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| Product | response regulator receiver protein |
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| Protein accession | YP_926410 |
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| Protein GI | 119773670 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.143294 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 6 |
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| Fosmid unclonability p-value | 0.0713478 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGACGCTT ACACCCTTCA CATAGCAACG GCCTTTGCCA GTGCCATGAT GACCATTAGC
CTGCTGGGGC TCTTTATCGC CAGCCCAAGA GAGTACAGCC TGCTTGACTG GTCCTTTGCC
GGATTGTGTT TTTTCGCAAC CAATGGCTTG ACGGTGTTGG TGTTTCACTC TGAGCAGCCA
TTTTGGGTGG CACCGGTACT TACCAACGCC TTCTATTTTG CCGGACACTG TGCCCTTCTG
GTGGGGGTGA GGCGTTACTT CGGCCTGAAA ACCCACTGGC AATTTGGTGT GGGGTTGGCC
CTCGTCATTG CGGCAGTGCA CCTCTTACCT TGGGTGCAGG CATCCGTCGC TAACCGTCTG
TTGCTGTTTT TCCCACTGCT GATGCTCATC AACAGCCTGA CCATTTCCGT ACTCTGGCGT
TACGGCGGCA GGGAGCTGAG ATTGGCGTGC ATGCCACTGT TGGTGTTGGA GCTGTTGTTT
TTGCTGCAAT TGTTATTGCG CACTCTGATC CTTGGCACAA CCTCAGATAT GAACCTGACC
TACGCCGGGA GCCAGTTTTT CCAAACCTCG GGTACGCTGG CGATTTTCGT CTTTTTAAGT
CTGGGCACCA TGGCCTGCGC CATGATGGTG ATTCGCCGCC AGGAGCTTGA GCTGAGGCAA
CTCACCACCA TAGACCCCCT TACCGGCTGG TTCAATCGTC GCGCCCTGAA TGACATTGCC
GTGCGTGAGT TTGAGCGCAG CGCCCGCACC TCCTCCGAGC TGGGGCTCCT GGTGCTGGAT
ATAGACCATT TCAAGAAGAT CAACGACACC TATGGCCACG TTGACGGCGA TGAGGCGCTC
AAGCATGTCA CCAACACCTG TGCCTTATTA CTGCGTGGCT ACGACTACCT GTTCCGCTTT
GGCGGTGAAG AATTTGTGAT CCTCTTACCC GGAAGTGACC ATGAGTGCAC TCGAAAATTG
GCCAATCGGT TAAGGTTAAA AATTCAAAGC GAGCCCGTTA CCCTTGGACA AGACAGAGTC
GCGTTGACCA TCAGCATAGG TGTGGCTCAG CGACGTGAAC GGGATCAAAG CTGGTTACAA
ATCCTGGAGC GGGCCGATTC AGCGCTTTAC CATGCCAAAC AATCAGGGCG TGATCGGGTT
GCATTTCATA ATGGCCTGGA GCTGAGCCAG GTCAGCTAG
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| Protein sequence | MDAYTLHIAT AFASAMMTIS LLGLFIASPR EYSLLDWSFA GLCFFATNGL TVLVFHSEQP
FWVAPVLTNA FYFAGHCALL VGVRRYFGLK THWQFGVGLA LVIAAVHLLP WVQASVANRL
LLFFPLLMLI NSLTISVLWR YGGRELRLAC MPLLVLELLF LLQLLLRTLI LGTTSDMNLT
YAGSQFFQTS GTLAIFVFLS LGTMACAMMV IRRQELELRQ LTTIDPLTGW FNRRALNDIA
VREFERSART SSELGLLVLD IDHFKKINDT YGHVDGDEAL KHVTNTCALL LRGYDYLFRF
GGEEFVILLP GSDHECTRKL ANRLRLKIQS EPVTLGQDRV ALTISIGVAQ RRERDQSWLQ
ILERADSALY HAKQSGRDRV AFHNGLELSQ VS
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