| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_0523 |
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| Symbol | |
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| ID | 4602778 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | - |
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| Start bp | 643905 |
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| End bp | 647444 |
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| Gene Length | 3540 bp |
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| Protein Length | 1179 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 639779859 |
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| Product | sensory box sensor histidine kinase/response regulator |
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| Protein accession | YP_926403 |
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| Protein GI | 119773663 |
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| COG category | [E] Amino acid transport and metabolism
[R] General function prediction only
[T] Signal transduction mechanisms |
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| COG ID | [COG0591] Na+/proline symporter
[COG0642] Signal transduction histidine kinase |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 7 |
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| Fosmid unclonability p-value | 0.183484 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TTGGCTGGGT ATTGGAACAT CATTCTGGGG TTTATTTTGC TGGCTTGGCT GTCTGTTGAT
ACCTGGTGGA TCAGCGTTAT TTCAATCGCC TATTTGGCCG TGCTCTTTAT TGTTGCTCAG
TGGGGGCAAA ACCAGCCCTT CGGCCAGTGG CGAAAAAGAC CCTGGGTGTA CAGCCTGTCA
TTGGGAGTCT GCTGTACCTC CTGGGCCTTT TACGGCACGG TCGGCCAGGC TGCCACCACA
GGTGCATGGT TGGCGCCTAT TTATATCGGC TCCATTGTCT GCCTGGTGCT GGCCTGGCCT
ATGTTGATGC GCACCCTGCA CATAGTGAAA AGCCAGAACC TCACCTCCAT CGCCGACTTC
ATTGCCTGCC GCTTCGACCG CTCACCCAAA ATTGCTGCCA GTGTGGCCAT GGTGTCGCTG
CTGGGCACCA TTCCTTACAT CGCCCTGCAA CTTCGGGCCA TCAGCACCAG TTTTGATCTG
CTGACCGGTA CTTTCCAGTC TGGGATAAGC ACGGCGTTTA TCGTTACCAT TGTGCTGATT
ATCTTCAGTA TTTTATTTGG TACCCGCCAG TTATCGGCAA GCAAACAAAA TCAGGGGCTG
GTGCTGGCCA TCGCTTTCAG CTCCGTGGTG AAACTGCTGG CGCTGACGAC TGTGGGCATC
TTTGCCACCT TTTATATTTT CGACGGCTTC AGCGATCTCC TTACCCGGGG GCAAGCGCTC
CCCACCAGTA AAGATGCCAA CTCCCTCTAT TTTGTGCTGT CGCAAATCCT GCTGGGGGCC
ATCACCATCT ATGCCCTACC CCAGGAATTC CACATGATGA TGATTGAGAA TCATCATGCC
AAAGAGCTCA AATCAGCCCG TTGGATGGTG CCTCTGTATC TGCTGCTGAT GAATGCCTTT
ATTCTGCCCA TTGCCCTGGC TGGCCAGTTG AGTTTTCCCG GCGGCAGTGT GGATGCCGAT
ACCTATGTAC TCACCCTGCC GCTGTTTTAC CAGCAGGCCT GGCTGGGGGT ACTGGTGTAT
CTCGGCGGCC TCGCTGCGGC AACCGCCATG GTGATTGTGG CCGCCATTGT ACTGAGCACC
ATGATTTCCA CCGAGATCCT GACTCCCCTG CTGCTTCGCC TGCCCAGATT CAGCTCCCAG
CAAACGCCAC AGCTCGCTGG TATTCTGCTG AACCTGCGCC GAATCGCCAT TGCCGCCATC
CTGTTATCGG CCTTTGCCTT CGAGCGCTAC ATAGACCAAC AAAATCACCT CGCCAGCATA
GGCCTCCTGT CTTTTGTGCT GCTGTCGCAA TTTGCCCCCG CCGCCATTGG CGCGCTGTAC
TGGCGCAGGG CCAATACCCA GGGTGCCTTT TGGGGCATGT TACTGGGCAG CCTGGTATGG
CTCTATACCC TGCTGCTACC CGCCACTTTC CCCGATGCCA ACTGGGTTAT CCATGGCCCC
TGGCACATCG GTTGGCTGGC CCCCCATGCC CTCTTTGGTC TTAATGGCCT GGATAACATC
AGCCATGGCC TCTTCTACAG CCTGCTGGTG AATATTGGCA GCTTCGTGCT TATCTCCCAT
TTCAGGGAGC AGAGTGTGGG CGAACTTTTG CAGGCCGATG TGTTTGTAAA CCGCAAGCAG
TTGCAGCTGG AGCGCCACCT GTCCGTCAGC GATCTGGCCA GCCTGCTGCA TCGCTTTATC
AATAAAGAAG AAGCGGATGC TCTGATGGCC AAAGCCAGGC AATTGGGCTC TGAGCTATCG
TCCCGCCGCG AAGAACTGGT GGATTACACC CGGCTGAAAC TCTCCGGTGT ACTGGGGTCA
GCCTCAACCC GCATGGTGAT GAACGCCGCG TCCCGCGCCC AGCAAGTACC GCTGGAGGAT
GTAGTCAGCA TTGTCGATGA AGCCAACCAG ATATTTGAAT TCAACCGTGA ACTGCTGCAA
TCGGGGGTGG AAAACATCGA GCAGGGTATC AGCGTGGTCG ATGCCGATAT GCGCCTGGTG
GCCTGGAACA AGCGTTATAT TGAGCTCCTT GATTACCCCA AAGATTATGT AAAAGCGGGC
ATTCCAATCG AGAAGCTGCT GCGCTACAAC ATAGAACGCG GCATCATAGT CGGTGACGAA
GCCCACGAAC TGGTGGAAAA ACGCCTCGCC CATATGCGCA GCGGCAGCCC CCATCATTTT
CAGCGCACCA TGCACGATGG CAGGGTATTG GAAATCCGCG GCCAGGCCAT GCCGGGTGGC
GGCTTTGTCA GTACTTTCAG CGACATCACC GCCCATATTC AGGCCGAAAA AGCACTGCAG
CAGGCCAACG AGACGCTGGA GAAACGGGTC GAAAGCCGTA CCCGGGAGCT CGCCAAGGCC
AAGGCCGAAG CCGAAGCCGC CAACAGCAGC AAAACCCGCT TTTTGGCGGC CGCCAGCCAC
GACCTGATGC AACCTTTTAA TGCACTCACC CTGTTCACCG AGATGCTGAA ACAAAGAGTA
ACCTCCACCG AACTTCAGGA TTTGGCGACC CATATTGAAG ACTCCCTCAA TGTGGTGGAA
AGTCTGCTGT CGGATTTGGT GGAAATCTCC CGCCTCGACA GCAGCAGCTT GAAAACCGAA
CAGAGCCAAT TTGCCATCGA CGACTTACTC TCGACGCTGG TTAACGAATT CAGAGTGTTA
TCCAAACAGC AGGGGATTGA GTTTGGCTAT CAGTTTTCAT CCTGCTTCGT ACAGAGCGAC
CAACGCCTGC TGCGGCGCAT CATTCAAAAT TTCCTCTCCA ACGCCTTTCA CTACTCCCCT
GCCGGCGCCC TGAATCAAAT TCAGTCGGCA ACACGTGTAA AGCTGGAAGG CGGAGAATCA
CTTACCAGTG ATGTTGAATT TATGCCCAGG GTAGTGCTGG GAGTGCGCAG ACGTCAGGAC
AGCCTGCTCA TTCAGGTATG GGATAATGGC CCGGGGATCC CGGCGGAAAA ACAGCAGGCA
ATTTTTGGTG AATTTGAACG CCTTGAGCAA ACCCGGGAAA TACCCGGACT CGGCCTTGGT
CTTGCGATTT GTGACCGCAT AGCCAAGCTG CTTGGGATCC GGATTTACCT GCATTCTGAG
CTTGGCAAGG GGACCTGTTT CAGCGTGGAA GTACCGCGGA TAAGGCAGCA AAAGCCTGCC
GGCAATGTGG TCAAACTGCG GCGCGACGAC GAAGCCATAG GCGACAGCTT CGATATTCAG
GTGTTGGTTA TCGACAACGA TGAACTGATG TTAAAAGCCA TCTCTTCACT GCTGCTGGGG
TGGGGTTGTA AGGTACTGAC AGCCAGAGAT AAAGCGAGTG CATTGGCACA GCTTGAAGTA
TCTAAGCCGC CCAGACTCAT TCTTGCGGAT TATCACCTCG ATGATGACCA AAACGGGGTT
TCGCTGGTGC AAAGCCTGCT TGAACATCCA AGGCTTTTGC AGGCGCGCCC CACCTGCATC
ATCTGCTCGG CTGACCCTTC AGAGGCCGTT CGGCAGCACA CCAGCAGCGC CAACTTCGGC
TTTGTGCGTA AACCGGTTAA AGCCACCGCA CTTAAGCGCT TGATTAAGCA GCTGTCGTGA
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| Protein sequence | MAGYWNIILG FILLAWLSVD TWWISVISIA YLAVLFIVAQ WGQNQPFGQW RKRPWVYSLS
LGVCCTSWAF YGTVGQAATT GAWLAPIYIG SIVCLVLAWP MLMRTLHIVK SQNLTSIADF
IACRFDRSPK IAASVAMVSL LGTIPYIALQ LRAISTSFDL LTGTFQSGIS TAFIVTIVLI
IFSILFGTRQ LSASKQNQGL VLAIAFSSVV KLLALTTVGI FATFYIFDGF SDLLTRGQAL
PTSKDANSLY FVLSQILLGA ITIYALPQEF HMMMIENHHA KELKSARWMV PLYLLLMNAF
ILPIALAGQL SFPGGSVDAD TYVLTLPLFY QQAWLGVLVY LGGLAAATAM VIVAAIVLST
MISTEILTPL LLRLPRFSSQ QTPQLAGILL NLRRIAIAAI LLSAFAFERY IDQQNHLASI
GLLSFVLLSQ FAPAAIGALY WRRANTQGAF WGMLLGSLVW LYTLLLPATF PDANWVIHGP
WHIGWLAPHA LFGLNGLDNI SHGLFYSLLV NIGSFVLISH FREQSVGELL QADVFVNRKQ
LQLERHLSVS DLASLLHRFI NKEEADALMA KARQLGSELS SRREELVDYT RLKLSGVLGS
ASTRMVMNAA SRAQQVPLED VVSIVDEANQ IFEFNRELLQ SGVENIEQGI SVVDADMRLV
AWNKRYIELL DYPKDYVKAG IPIEKLLRYN IERGIIVGDE AHELVEKRLA HMRSGSPHHF
QRTMHDGRVL EIRGQAMPGG GFVSTFSDIT AHIQAEKALQ QANETLEKRV ESRTRELAKA
KAEAEAANSS KTRFLAAASH DLMQPFNALT LFTEMLKQRV TSTELQDLAT HIEDSLNVVE
SLLSDLVEIS RLDSSSLKTE QSQFAIDDLL STLVNEFRVL SKQQGIEFGY QFSSCFVQSD
QRLLRRIIQN FLSNAFHYSP AGALNQIQSA TRVKLEGGES LTSDVEFMPR VVLGVRRRQD
SLLIQVWDNG PGIPAEKQQA IFGEFERLEQ TREIPGLGLG LAICDRIAKL LGIRIYLHSE
LGKGTCFSVE VPRIRQQKPA GNVVKLRRDD EAIGDSFDIQ VLVIDNDELM LKAISSLLLG
WGCKVLTARD KASALAQLEV SKPPRLILAD YHLDDDQNGV SLVQSLLEHP RLLQARPTCI
ICSADPSEAV RQHTSSANFG FVRKPVKATA LKRLIKQLS
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