Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sama_0492 |
Symbol | |
ID | 4602747 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella amazonensis SB2B |
Kingdom | Bacteria |
Replicon accession | NC_008700 |
Strand | - |
Start bp | 604192 |
End bp | 605688 |
Gene Length | 1497 bp |
Protein Length | 498 aa |
Translation table | 11 |
GC content | 55% |
IMG OID | 639779828 |
Product | sodium/proline symporter |
Protein accession | YP_926372 |
Protein GI | 119773632 |
COG category | [E] Amino acid transport and metabolism [R] General function prediction only |
COG ID | [COG0591] Na+/proline symporter |
TIGRFAM ID | [TIGR00813] transporter, SSS family [TIGR02121] sodium/proline symporter |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 18 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 11 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGGAATACT CCAGCTATAT TTCGCTGGCA CTCTACTTTA TTGCCATGTT GGCAATAGGG CTGTTTGCCT ATCGTAATTC CACCGACGAT CTTGCGGGTT ATATGCTTGG CGGGCGTCAG GTCAGCCCGC ACGTCACCGC CCTGTCTGCC GGTGCATCCG ATATGAGCGG CTGGATGCTG ATGGGGCTGC CCGGCGCCAT GTTTACCATG GGCTATGATG CTCTGTGGAT TGCCGCTGGC CTGCTGCTGG GGGCGCTGCT CAATTATCTG CTGGTTGCAC CCAGACTCAG AGTGTTTACT GAAGCAGCTG ATGACGCCCT GACACTGCCA GACTTTTTCA GCAAGCGCTT CAATAAAGAC AACGGCTCGG TGCGGATGAT TTCAGCGGCG GTGATTATCC TGTTTTTCAC CCTGTATACC TCAGCCGGAC TGGTCGCCGG GGGTAAGTTT TTTGAGTCGG CTTTTGGACT GGGCTATCAA ACCGGCTTGT TGCTGACTGT GTCTGTGGTG GTGGCATACA CCCTGCTCGG CGGATTCCTG GCGGTCAGCC TGACTGACTT TGTTCAGGGC TGTATCATGT TTCTTGCACT GGTGTTGGTG CCGTTGGTTG CGCTTCAGGA ATTCAACAGC AGTACCGACA TGCTGGCGCA GGCCAGCCGC AGCATTACCC CATTGGCCGA CTCTTTTGAG CACATGGGGA TTCTGGCGAT AGTCTCAAGC CTCGCATGGG GGCTGGGTTA CTTTGGGCAA CCGCATATTA TTGTGCGATT TATGGCAATT CGGTCGGTGA AGGACATTGC TGTTGCCCGC AATATCGGCA TGAGCTGGAT GTTGGTCACC ATATTAGGCG CGCTGGCAAC CGGACTTATC GGCGTGGCTT ACGTGAATAA ATTCAAGCCG GGACTGGACG ATGGCGAGAC CATCTTCATT TTGTTCGCTG AAATCCTGTT TCATCCGCTC ATCAGTGGGT TCCTGCTGGC AGCCATTCTG GCGGCCATCA TGAGCACCAT TTCCTCGCAG TTACTGGTGT CATCAAGCTC TCTGTCGGAG GATGTGTACC GCGCCCTGTT TCACAAAGAG ATGGACCAGA AAGCCACGGT TACGGCGGGA CGTATCGGTG TGCTGGCCGT GGCGGCGGTG GCAACGCTGC TGGCGCTGGA CAATAACGCC AGCATCCTCT CGCTGGTGAG CAATGCCTGG GCCGGTTTTG GCGCCGCCTT CGGCCCCCTC GTACTCCTGA GTTTATTCTG GCCCCGCATG ACCCACAGCG GCGCAGTAGC AGGCATACTC TGTGGCGCAG GCACTGTGTT GGTGTGGAGC CAGGTTCCAC TGCTCGAAAA CGGCTTACCC TTATCCAGTC TCATTTATGA GATTGTGCCC GGGTTTATCG TAAGCACTCT CGCCATAGTA CTGGTGAGTT ATGCAGACCA GGCCCCCTGT AAATCGACTC AGAAAGCCTT CAAGCTCAGC CGGGATAGGC TGAAACAAGT CAGCTGA
|
Protein sequence | MEYSSYISLA LYFIAMLAIG LFAYRNSTDD LAGYMLGGRQ VSPHVTALSA GASDMSGWML MGLPGAMFTM GYDALWIAAG LLLGALLNYL LVAPRLRVFT EAADDALTLP DFFSKRFNKD NGSVRMISAA VIILFFTLYT SAGLVAGGKF FESAFGLGYQ TGLLLTVSVV VAYTLLGGFL AVSLTDFVQG CIMFLALVLV PLVALQEFNS STDMLAQASR SITPLADSFE HMGILAIVSS LAWGLGYFGQ PHIIVRFMAI RSVKDIAVAR NIGMSWMLVT ILGALATGLI GVAYVNKFKP GLDDGETIFI LFAEILFHPL ISGFLLAAIL AAIMSTISSQ LLVSSSSLSE DVYRALFHKE MDQKATVTAG RIGVLAVAAV ATLLALDNNA SILSLVSNAW AGFGAAFGPL VLLSLFWPRM THSGAVAGIL CGAGTVLVWS QVPLLENGLP LSSLIYEIVP GFIVSTLAIV LVSYADQAPC KSTQKAFKLS RDRLKQVS
|
| |