| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_0466 |
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| Symbol | |
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| ID | 4602721 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | + |
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| Start bp | 570455 |
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| End bp | 572968 |
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| Gene Length | 2514 bp |
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| Protein Length | 837 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 639779802 |
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| Product | MSHA biogenesis protein MshQ |
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| Protein accession | YP_926346 |
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| Protein GI | 119773606 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.0264284 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.812437 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCAGCCGC CGCCCAACTT GCCTTCCAAG GCAGGAAACT TTACCTGCTA TACCCAGGGG
AATAATCGCC ATTGCTCAAG AAGCGACGCT TTTGGCCCCG GTGACTTCAA CTTTGCCAAT
GGTGATTTTG AAAAAGGCTC TTACCTGGCA ACCAATGGTG CCACGACTCG GCTTTACTTT
GACAATCTCA CCCTGAAAAA TACGAGCATC CATCAGGGTT ATAATCCTTC ACATCTCATC
GTCTATGTGC GGGGAAATCT ACACATAGAG GGGCACAACT TTTTCAAAGG CATCCTGTAC
GTGGAAGGCA GCATCTTCAT GTCGGGTAAT GCCACCATCA GTGGTGCTCT GGCCGTTCAC
GGGAATGTTC CTTCGGGAGG GAACTTCACA CCGATTATCG ACCTTGGTGT CATTGATGAT
GCCGACTTTG GCGGCATGTG TGATAAGCAA GCAAACGTTC AAATTGACCA CTTCCTGCTG
CAATACTCCC AAAGCCCCCT GACCTGCAAG GCTGAGACTG TCACTGTATC TGCTTGCAAA
AATAGTAATT GCAGTGAACT GGTCACAGAC CCTGTCAGTG CCACCTTAAC TGCGACCAAT
GCCGTAACGG GTTGGGAGGG CGGAAACAAC ATCAGTCTGG TCAATGGCAG TGCGCAAAAA
CGGCTTTGGC ATACGGTGGT GGCGCCGCCG GTGACTATTG GTGTGGGCAG CTCTTCACCG
GTGGCAGTGA ATCCGACTCT GTGCCAGCGG GGAAGCGGTA TGCCCAGCAC GGCCGCCTGT
ACCTTTGCCT TTGCCGACAG CGGGCTTTTG TTTGATGTAC CGGATAAACT CGCGGGTAAG
GCGGCCAGCA TTACCCTGAG CGCAGTGCGT AAAGACGACC AGTCACAGCG CTGTGTTCCT
ACCTTTCAAA ATACGACCAA GCAGCTGGCA TTCTGGAGCG ACTACCTCAG TCCTGATGCA
GTCGCTTTGG TGGGTAGTCC GAAAGTGACA GTGGAGAGTA GCGTTATCGG CACCAGCGCC
CAGGACGCGA CTTCTATCCC CCTGAGCTTT AACAGTCAGG GTGAGGCGAG GTTGAGTGTG
AATTATCCGG ACGCCGGTCA GCTAGCCCTC AATGCCCGGT ATGTGGGTGG CGGCAGTGAA
GGGAATTTGC AGCTGGATGG CAGCGACAGC TTTGTCAGCT TCCCTGTGGG GTTGTGTGTC
AAAGCCAAAG ACCCTGTGGC GAGCTGCCCG GCAGGGGATG CTACTTGCGC CGCCTATCGC
AAAACAGGCG ACAGCTTTGA CTTGCTAATC TCGGCCCACG CCTGGGAGTC AGATACTGAC
AGTGAATTTT GCGATAACGC CACAACCCCC AACTTTGCCA TACAGAACAT CGCCCTTGGC
AGCGCTCTGG TGGCGCCTGT GGGCGGCAGT GATGGGGTAG CAGGCACCGC CAGCTATTCC
CATAAGGCCC AGGCAGGCGC CAATGAAATC GGCCAAAGTA TCAGTGAGGT GGGGGTATTC
CGTTTCAGCG CCCAGGCACC AAACACCTAC CTCGGCAGCC AGTTTTATCG TATTCCGCTG
GCACAGTCCG GCAATATTGG CCGCTTTGTT CCGGCAGGTT TTGCACTGAA AAACGTCAGT
TTGATCCCCG CCTGCGGTTT GCTTAACTCG CCAAGTTTCA GTTACATGGG GCAACCCACT
CCGCTGTCGA TGCAGCTTGA AGCGCACAAT CATCAGAATC AGGTAACGGT AAATTACCGG
GATGATTTTG CCAAAGGCAA CGCGGTATTG GCGGCAGAAA ACGACAACGA CGGCCAAGAT
TTGTCTGCCA GATTGAGCGT TTTGGCGGGC AAATGGCAGC AAGGGGTCAT GGAGTTTGAC
AGCAGCTCGA CATTCGTTTT TGAGCGCACC ACGGCCCCTG GGGTGGATGG TCCCTTCGAG
CAGTTGGATA TTGGTCTCTG GGTGGATGAT ATGGACGGTG ACTTGTCCAG GCTGGCGCCA
CTGGATATGA AACCTGACAG CACCGGCGAC TGCAGTATTC TTCCCGGGGG CTGCAGCGCT
CAGCGACTGG GTGCTGTGTC CATGCGCCAC GGCCGGGCGG TGCTGGATAA TACCTATGGT
CCTGAAACGG ATATCCTGCG TATGCCTGCC TATGCCCAGT ACTGGAACGG CAGCGCCTGG
ACTCTGTCCT CCGAGGACAG TTGCAGTATC GCCTCAGTAC CTTTGAGTTT TCAGGTGGAT
AACCCCGCTC TGGGCTATTT GTACCAGCCG GGACTGCTGG CAGGGCAAAG TATCGACCGT
AGCGCCACCC CGGCAAGTTT CAGTCAGGGG CAACTGCCAC TCTTTTGGCA GGCTTTGGGG
AGCCCGGGTT ACCGTGGACA GGTGACGGCA CCACTGGACG TACCGGATTG GCTGCATTGG
TACTGGAATT GGAGCGGCAG CGAGCCACAA ACACTGAGCG ATCCCAGGGC AAGTGCCTAT
TTCGGGCGTT ATCGGGGTGA CGATCGCATT ATCTTCTGGC GCGAGATCAA TTGA
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| Protein sequence | MQPPPNLPSK AGNFTCYTQG NNRHCSRSDA FGPGDFNFAN GDFEKGSYLA TNGATTRLYF
DNLTLKNTSI HQGYNPSHLI VYVRGNLHIE GHNFFKGILY VEGSIFMSGN ATISGALAVH
GNVPSGGNFT PIIDLGVIDD ADFGGMCDKQ ANVQIDHFLL QYSQSPLTCK AETVTVSACK
NSNCSELVTD PVSATLTATN AVTGWEGGNN ISLVNGSAQK RLWHTVVAPP VTIGVGSSSP
VAVNPTLCQR GSGMPSTAAC TFAFADSGLL FDVPDKLAGK AASITLSAVR KDDQSQRCVP
TFQNTTKQLA FWSDYLSPDA VALVGSPKVT VESSVIGTSA QDATSIPLSF NSQGEARLSV
NYPDAGQLAL NARYVGGGSE GNLQLDGSDS FVSFPVGLCV KAKDPVASCP AGDATCAAYR
KTGDSFDLLI SAHAWESDTD SEFCDNATTP NFAIQNIALG SALVAPVGGS DGVAGTASYS
HKAQAGANEI GQSISEVGVF RFSAQAPNTY LGSQFYRIPL AQSGNIGRFV PAGFALKNVS
LIPACGLLNS PSFSYMGQPT PLSMQLEAHN HQNQVTVNYR DDFAKGNAVL AAENDNDGQD
LSARLSVLAG KWQQGVMEFD SSSTFVFERT TAPGVDGPFE QLDIGLWVDD MDGDLSRLAP
LDMKPDSTGD CSILPGGCSA QRLGAVSMRH GRAVLDNTYG PETDILRMPA YAQYWNGSAW
TLSSEDSCSI ASVPLSFQVD NPALGYLYQP GLLAGQSIDR SATPASFSQG QLPLFWQALG
SPGYRGQVTA PLDVPDWLHW YWNWSGSEPQ TLSDPRASAY FGRYRGDDRI IFWREIN
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