| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_0419 |
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| Symbol | uvrD |
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| ID | 4602674 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | + |
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| Start bp | 515732 |
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| End bp | 517897 |
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| Gene Length | 2166 bp |
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| Protein Length | 721 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 639779755 |
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| Product | DNA-dependent helicase II |
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| Protein accession | YP_926299 |
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| Protein GI | 119773559 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0210] Superfamily I DNA and RNA helicases |
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| TIGRFAM ID | [TIGR01075] DNA helicase II |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.590239 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGACGTTT CTTTTTTGCT GGATGGCCTG AACGATAAGC AGCGCGAAGC CGTGGCTGCA
CCCCAGTCCA GCATGCTGGT GTTGGCCGGT GCCGGCAGTG GCAAGACCCG GGTGTTAACC
CACCGAATCG CCTGGCTGTT GCAGGTGGAG AACCAGAGTC CCTATTCGAT ATTGGCGGTA
ACCTTCACCA ACAAGGCCGC GGCCGAAATG CGTGAGCGGG TCGAAAAAAT CGTTGGTCAC
AATACCGGTC GCATGTGGAT AGGTACTTTC CACGGCCTGG CCCATCGCCT GCTGCGCACC
CACTGGCAGG ACGCAGGTCT GCCACAAAGT TTCCAGATCA TGGACTCAGA CGATCAGCAG
CGTCTGCTGA AACGCATTCT CAAGAGCATG AATCTGGATG AAAAACAGTA TCCACCGCGT
CTGGTTGCCG GGTATATCAA CGGCAAAAAA GATCAGGGAC TGCGCCCAGC CCATATAGAC
GCAGGTCCAT TCCCTATGGA GCAAAAGCTG CTGGAACTGT ACCGTATCTA TCAGGACAGT
TGTGACCGGG CTGGCTTGGT GGACTTTGCT GAAATCCTGC TGCGTGCCCA TGAGCTTTGG
CTCAATAAAC CCCATCTGCT GGCCCACTAT CAGGACAGAT TCCGCCATAT TCTGGTGGAC
GAGTTTCAGG ATACCAACGC CATTCAGTAC GCCTGGATCC GGGTGCTGGC CGGCAACACG
GCAAATGTGA TGATTGTGGG GGATGATGAC CAGTCGATTT ATGGCTGGCG CGGCGCCCAG
ATTGAAAACC TGCATCGCTT TTTGCAGGAC TTCCCCGGCG CCAAGACCAT ACGCCTGGAG
CAAAATTACC GCTCCACCGG CAATATTCTC AAGGCCTCCA ACGAACTTAT CGCCAACAAC
CCCGACCGTA TGGGCAAGGA GTTGTGGACC GAAGACAAGG ATGGCGAGCC AATCTCCCTC
TACTGCGCCT TTAACGAGAT GGACGAGGCC CGCTTTATTG TCGGCCGCAT CAGCGACTGG
CAGGACAAGG GCGGCATGCT CGGTGAGTGC GCCATTCTGT ACCGTTCCAA CGCCCAGTCA
CGGGTGCTGG AAGAGGCCTT GCTCCACAAG GGAATGCCCT ATCGTATCTA TGGTGGCCTG
CGCTTCTTCG AACGGCAGGA AATCAAGGAT GCCATGGGCT ATCTGCGCCT TATCTCCAAC
CGCGACGACG ATGCTGCTTT TGAGCGTGTG GTCAATACGC CGGCCCGAGG CATAGGTGAG
CGAACCCTGG ATATTTTGCG CAGTACCGCC CGCAAAGAGC AGCTGACCCT GTGGCAGACC
TCGCTGCGTC TGCTCGAGGA AAAGGTGCTG TCGGGCCGCG CTGCCAATGC GGTGAAAGGC
TTTTTGGATT TGATAGTCCA GCTTCGAAGC GACACCGACG AGTTGCCGCT CTACCGCGTG
GCAGATCATG TGATTCAGCA CTCAGGGCTT AAGGCCATGT ACGAGGCCGA AAAGGGCGAA
AACGCTCAGG CCCGGGTAGA AAACCTTGAG GAACTGGTCA CGGCCGCCCG CAGCTTTGAG
ATGCCGGAAG AGCTGGAAGA CATGGGCGAA CTCAATGCCT TTTTGTCCCA TGCGGCACTG
GAGGCGGGGG AAGGTCAGGC CGATGCCCAC ACAGATGCTG TGCAACTGAT GACGCTGCAC
TCCGCCAAGG GACTGGAATT CCCCATGGTG TTTATGGCCG GGGTGGAAGA AGGCATATTC
CCCAGTAAGC TGGCTCTGGA GGAGGGCGAC CGCCTCGAAG AGGAGCGCCG CCTGTGCTAT
GTGGGTATGA CCCGGGCAAT GCAAAAGCTT TATATCACCT ATGCCGAGTC ACGCCGTATC
TATGGCCGCG AAGACTATGC CAGACCCTCG CGCTTTATCC GCGAAATTCC CCCCGAGTAT
GTGGAAGAGA TTCGCCTTAA AGCCCAGGTC TCGGCGCCAC TGGTGGCCAA TCGTTTTGCC
CATGCACAGC AAACCTTTAA TGATTCCGGC TTAAAGATTG GCGGCCGGGT ACGGCACTTT
AAGTTTGGTG AAGGCACTGT CACCAACTAC GAGGGCAGTG GCCCCCAGGC GAGGGTACAG
GTGCAGTTTG ACGATTTCGG CAGCAAATGG CTGGTGGTCA GCTACGCCAA GCTGGAATCC
CTGTGA
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| Protein sequence | MDVSFLLDGL NDKQREAVAA PQSSMLVLAG AGSGKTRVLT HRIAWLLQVE NQSPYSILAV
TFTNKAAAEM RERVEKIVGH NTGRMWIGTF HGLAHRLLRT HWQDAGLPQS FQIMDSDDQQ
RLLKRILKSM NLDEKQYPPR LVAGYINGKK DQGLRPAHID AGPFPMEQKL LELYRIYQDS
CDRAGLVDFA EILLRAHELW LNKPHLLAHY QDRFRHILVD EFQDTNAIQY AWIRVLAGNT
ANVMIVGDDD QSIYGWRGAQ IENLHRFLQD FPGAKTIRLE QNYRSTGNIL KASNELIANN
PDRMGKELWT EDKDGEPISL YCAFNEMDEA RFIVGRISDW QDKGGMLGEC AILYRSNAQS
RVLEEALLHK GMPYRIYGGL RFFERQEIKD AMGYLRLISN RDDDAAFERV VNTPARGIGE
RTLDILRSTA RKEQLTLWQT SLRLLEEKVL SGRAANAVKG FLDLIVQLRS DTDELPLYRV
ADHVIQHSGL KAMYEAEKGE NAQARVENLE ELVTAARSFE MPEELEDMGE LNAFLSHAAL
EAGEGQADAH TDAVQLMTLH SAKGLEFPMV FMAGVEEGIF PSKLALEEGD RLEEERRLCY
VGMTRAMQKL YITYAESRRI YGREDYARPS RFIREIPPEY VEEIRLKAQV SAPLVANRFA
HAQQTFNDSG LKIGGRVRHF KFGEGTVTNY EGSGPQARVQ VQFDDFGSKW LVVSYAKLES
L
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