Gene Sama_0403 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSama_0403 
Symbol 
ID4602658 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella amazonensis SB2B 
KingdomBacteria 
Replicon accessionNC_008700 
Strand
Start bp500902 
End bp502491 
Gene Length1590 bp 
Protein Length529 aa 
Translation table11 
GC content56% 
IMG OID639779739 
Productdrug resistance transporter, EmrB/QacA family protein 
Protein accessionYP_926283 
Protein GI119773543 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG2814] Arabinose efflux permease 
TIGRFAM ID[TIGR00711] drug resistance transporter, EmrB/QacA subfamily 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones14 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGTGCGA GTATCGCGTT GCCGCAAACC GATGTGGATT ACGGTGTAGG CAGTCGCCGC 
GCCTGGATTG CCGTGATGGG CGGCCTTATC GGGGCATTTA TGGCGATTCT GGACATCCAG
ATCACCAATG CCTCCATGAA GGAGATCCAG GGCAGCCTGG GGGCGACTCT TGAAGAGGGC
TCTTGGATTT CAACCGCTTA TCTGGTGGCT GAAATGATAG CCATTCCCCT GTCGGGATGG
CTCAGTACCG GTTTGTCGGT GCGCCGTTAC CTGCTGTGGA GTACTACCGC CTTTATTCTC
AGCTCGCTGC TTTGTTCCAT GGCATGGGAT TTAAACTCCC TGATTGCATT TCGTGCCCTG
CAGGGATTCT TTGGCGGCGC CCTCATTCCG CTGGCGTTTC GTCTGATTGT GGAATGCCTG
CCTTTTGAAA AGCGTGCCAT GGGGATGGCG CTCTTTGGGG TCACGGCAAC CTTTGCGCCT
TCCATCGGGC CTACTCTGGG TGGCTGGCTA ACCGAGCATT TCAGCTGGCA TTTTCTGTTC
TATATCAATG TGCCACCCGG ACTTCTTGTA CTGTGGATGC TGGCCTATGG CCTGCAAAAA
GGCCCCATCG ATTGGGGCAA ACTTGGCAAG GTGAGCTGGG TTGGTATCGC CACCATGGCG
CTCGGCCTTG GCTGCCTTGA AGTGGTGCTG GAGGAGGGGA ACCGAAAAGA CTGGCTCGGT
TCCGACGTTA TCCGTGATTT GGCCATCATA GCCGCCATCA ACCTGGTGCT CTTTGTCTAT
TTGCAGCTGA GGAGCCGCAA CCCGCTGGTT AACCTGCGTC TCTTAGCCCA CAGGGACTTT
GCGTTGTCGT CGTTGTCGTA TTTTTTGCTG GGACTGGGGC TTTTTGGCGC GATTTACCTT
ATTCCGCTTT ACCTGTCGCA GATCCATAAT TATTCGGCGC TGGAAATTGG CAAGGTCATC
ATGTGGATGG GGTTCCCCCA GCTTTTGGTG CTGCCTCTGG TACCTAAGTT GACCCAAAAG
CTGGATCCCC GCTATCTGGC GGCCTGGGGC TTTTTGTTGT TTGCTTTGAG TTACTATCTC
AATGCCCATA TGACGGCCCA GTACGCCGGT GAGCAGATGA TTCTGGCGCA AATCGTCAGG
GCGCTCGGGC AGCCATTCGT GCTGGTACCC ATCGGTATGA TAGCGACCAT GCATTTGCGT
CAGGAAGATA CCCCAAGCGC GTCTACGCTA CTGAATCTTA TCCGAAACCT CGGTGGTGCC
TGTGGCATTG CGCTGGTGGC GACCATGCTG GATAACCGTT TCCGCCAGCA TCTGGCGTAC
TTGAAAGAGT CGCTGCCTGC GGTCAGTCAG CAGGCGCATA CCTTCCTGCA ACAGCAGGCA
AGTAGCCTGT TTGCAGCCGG GGCCGATCCT ATGGCGGCCG ATTCGATGGC CCGGAAGATG
CTGTCTGACA CCCTGGTGCG GGAAGCTTAC ATGCAGGCCT ACAACGATGT GTTCTTTGCC
ATCGGGGGCT TGCTGTTGGT TGCCGTCGTG GCTGTGTTGC TCATCAGACC TTCTTCTCAG
GCTGGCAATA GCGGCGCAGC CGGACACTGA
 
Protein sequence
MSASIALPQT DVDYGVGSRR AWIAVMGGLI GAFMAILDIQ ITNASMKEIQ GSLGATLEEG 
SWISTAYLVA EMIAIPLSGW LSTGLSVRRY LLWSTTAFIL SSLLCSMAWD LNSLIAFRAL
QGFFGGALIP LAFRLIVECL PFEKRAMGMA LFGVTATFAP SIGPTLGGWL TEHFSWHFLF
YINVPPGLLV LWMLAYGLQK GPIDWGKLGK VSWVGIATMA LGLGCLEVVL EEGNRKDWLG
SDVIRDLAII AAINLVLFVY LQLRSRNPLV NLRLLAHRDF ALSSLSYFLL GLGLFGAIYL
IPLYLSQIHN YSALEIGKVI MWMGFPQLLV LPLVPKLTQK LDPRYLAAWG FLLFALSYYL
NAHMTAQYAG EQMILAQIVR ALGQPFVLVP IGMIATMHLR QEDTPSASTL LNLIRNLGGA
CGIALVATML DNRFRQHLAY LKESLPAVSQ QAHTFLQQQA SSLFAAGADP MAADSMARKM
LSDTLVREAY MQAYNDVFFA IGGLLLVAVV AVLLIRPSSQ AGNSGAAGH