| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_0402 |
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| Symbol | |
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| ID | 4602657 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | + |
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| Start bp | 499845 |
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| End bp | 500891 |
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| Gene Length | 1047 bp |
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| Protein Length | 348 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 639779738 |
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| Product | HlyD family secretion protein |
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| Protein accession | YP_926282 |
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| Protein GI | 119773542 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG1566] Multidrug resistance efflux pump |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.111756 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCAAGT CAAAAGCCCT GGTGCTGTTA CCCGTACTGC TGGTGCTGGC CGGTGGTGGC
TTCTATCTGT GGCACAGCCT CAGATTTATT GAACACACAG ACAACGCCTA TGTTGAAGCC
GATATTTCCC AATTAAGCGT TAAAGTGCCG GGGCTGGTCG TGCAATCTGA GGTGCAGGAC
AACCAATATG TCACCGCCGG AACCCTTTTG GCGAAGCTGG ATGACAGCGA GTTTCGCGCC
AGAGTATTGC AAAGTGAGGC CAGGCTGGCC AGCGTGGGCG CAGAGCTCGC GACCCTGGAA
GCCAAGCTGC TGCTGCAGGC ATCCCTGATT GCCCAGGCCA AAGCGGGAGT GCAGGCGACA
GAGGCCGATG TCCGCCGGGT ACAGCAGCAA CTGACACGCG CCAGCGAGCT GCGTCGTCGT
GATTACAGCT CTCAGGATGA TGTTGATCGT CTGACCGCGG AGTTTGACGG GGCTGAGGCT
CGTCTTGCCG AGTCCAGGGC ATCACTGGCT GCCAGAGAGC AGGAGCTTGG GGTGCTCAAG
GCCCAGCGTG AGCAGCTTTT TGCTGCCCGT GCCGAAGCCA ACGCGGGGCT GGAGCTGGCC
CAACTTCAAT TGAAAGATAC CGAAATTCGC GCGCCCTTCA ATGGCATTGT GGGTAAGCGC
GGCGCCTTTG TCGGCCAATA TGTGCAGCCG GGGCAGGCGC TTTTCAGTTT GGTACCGGAC
GGAACTGTAT GGATTACGGC GAACTTTAAA GAGACCCAAA TCCAGGCCAT GGTTCCGGGC
CAGCCGGTGG CAGTGTCACT CGACGCGTTT CCCGACCATG ATTTCCATGG AGTCATCGAC
AGCCTGTCAC CGGCTTCCGG CGCCAAATTC AGCTTATTGC CCGCCGAAAA TGCCACTGGC
AATTTCACCA AAATTGTACA GCGCATTCCT GTTCGTATCC GTCTTGAGCT GCCACCCGGA
GAGCAAAAGG TGGTACCGGG GCTCAGCGCC GTAGTGTCCG TGGATACGGC CGCAACGCCC
GCGCTGACAG TGACCGCCGG TCGCTGA
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| Protein sequence | MSKSKALVLL PVLLVLAGGG FYLWHSLRFI EHTDNAYVEA DISQLSVKVP GLVVQSEVQD
NQYVTAGTLL AKLDDSEFRA RVLQSEARLA SVGAELATLE AKLLLQASLI AQAKAGVQAT
EADVRRVQQQ LTRASELRRR DYSSQDDVDR LTAEFDGAEA RLAESRASLA AREQELGVLK
AQREQLFAAR AEANAGLELA QLQLKDTEIR APFNGIVGKR GAFVGQYVQP GQALFSLVPD
GTVWITANFK ETQIQAMVPG QPVAVSLDAF PDHDFHGVID SLSPASGAKF SLLPAENATG
NFTKIVQRIP VRIRLELPPG EQKVVPGLSA VVSVDTAATP ALTVTAGR
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