Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sama_0337 |
Symbol | |
ID | 4602593 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella amazonensis SB2B |
Kingdom | Bacteria |
Replicon accession | NC_008700 |
Strand | + |
Start bp | 406008 |
End bp | 407420 |
Gene Length | 1413 bp |
Protein Length | 470 aa |
Translation table | 11 |
GC content | 61% |
IMG OID | 639779666 |
Product | isopropylmalate isomerase large subunit |
Protein accession | YP_926218 |
Protein GI | 119773478 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0065] 3-isopropylmalate dehydratase large subunit |
TIGRFAM ID | [TIGR00170] 3-isopropylmalate dehydratase, large subunit |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 0.301995 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 10 |
Fosmid unclonability p-value | 0.508758 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCAAAGA CTCTGTATGA GAAAGTGTGG GACGCCCACC TGGTGGTTGA GCCAGCCGGT GAAGCGCCCA TCATCTATGT AGACCGGCAT CTGGTGCACG AGGTGACCTC ACCTCAGGCA TTCAGTGGCC TGAAGATGGC CGGTCGCCCA CTGCGGGCAG TGGAAAAAAC CTTTGCCACC ATGGATCACA ATACCTCTAC CAAGAGCGCC AGCTTAACAG CATTAAGCCC CATGGCCCGC ACTCAGGTAG AGACCCTGGC CGACAACTGC CGCGACTTTA ATGTGCGTTT GTACGACATT CACCATCCCA ATCAAGGCAT TGTGCACGTG ATGGGCCCCG AGCTTGGCAT TACCCTGCCG GGCACTGTGA TTGTGTGCGG CGACTCCCAC ACCGCCACCC ACGGCGCATT CGGTGCGCTG GCCTTCGGTA TCGGCACCTC GGAAGTGGAG CACGTACTGG CTACCCAGAC CCTGCGTCAG CTCAAGGCCA AGACCATGAA AATCGAGGTG CGCGGCAAGG TGGCCGATGG CATCACCGCC AAGGACATAG TGCTGGCCAT TATTGGTAAA ATCGGCATGG ATGGCGGCAC AGGTTATGTG GTGGAGTTCT GCGGCGAGGC CATTCGTGAC CTCTCCATGG AGGGGCGTAT GACCCTGTGT AATATGGCTA TCGAAATGGG TGCCAAGGCC GGTATGGTGG CCCCCGATGA AACCACTTTC GCTTACCTCG AAGGTCGTGA GTTCGCGCCC AAGGGTGATG CCTGGCAGCA GGCGCTGGCC GACTGGCGCG AGCTGCACAC GGATGCCGAT GCGGTATTTG ATGCCGAAGT GGTACTGGAA GCGGCCGCGA TTGCGCCGCA GCTGACCTGG GGCACTAACC CGGGGCAGGT GGTGGCCATC GATGGCGTGG TGCCAAACCC CGCCGATGAA ACCAATCCCG TGGTGCGCAC CAGCATGGAG AAGGCACTGG CCTATGTGGA TTTGACCCCG GGCACCCCCA TGACCGATAT CGCCATCAAC AAGGTGTTTA TCGGCTCCTG CACCAACTCC CGTATCGAAG ACTTGCGCGC TGCGGCGGCG CAGGCCAAGG GACGCAAGGT TGCCAGTGGC GTAACCGCCA TTGTGGTGCC GGGCTCAGGT CAGGTAAAAC TGCAGGCCGA GGCCGAGGGC CTGGACAAAA TCTTCCTTGA GGCGGGTTTT GAGTGGCGCC TGCCGGGCTG CTCCATGTGT TTGGCGATGA ACGATGACAG GCTGGAAGCG GGCGATCGCT GCGCCTCCAC CAGTAACCGT AACTTTGAAG GACGCCAGGG GCGGGGCAGC CGCACCCATC TGGTGAGCCC TGCCATGGCC GCTGCGGCCG CGGTTGCCGG TCACTTTGTC GATATTCGCG TTCACCGTCC TCTGGAGGAT TAA
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Protein sequence | MAKTLYEKVW DAHLVVEPAG EAPIIYVDRH LVHEVTSPQA FSGLKMAGRP LRAVEKTFAT MDHNTSTKSA SLTALSPMAR TQVETLADNC RDFNVRLYDI HHPNQGIVHV MGPELGITLP GTVIVCGDSH TATHGAFGAL AFGIGTSEVE HVLATQTLRQ LKAKTMKIEV RGKVADGITA KDIVLAIIGK IGMDGGTGYV VEFCGEAIRD LSMEGRMTLC NMAIEMGAKA GMVAPDETTF AYLEGREFAP KGDAWQQALA DWRELHTDAD AVFDAEVVLE AAAIAPQLTW GTNPGQVVAI DGVVPNPADE TNPVVRTSME KALAYVDLTP GTPMTDIAIN KVFIGSCTNS RIEDLRAAAA QAKGRKVASG VTAIVVPGSG QVKLQAEAEG LDKIFLEAGF EWRLPGCSMC LAMNDDRLEA GDRCASTSNR NFEGRQGRGS RTHLVSPAMA AAAAVAGHFV DIRVHRPLED
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