Gene Sama_0327 details

Gene Information

• Locus tag: Sama_0327
• Symbol: radC
• ID: 4602583
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Shewanella amazonensis SB2B
• Kingdom: Bacteria
• Replicon accession: NC_008700
• Strand: +
• Start bp: 394468
• End bp: 395145
• Gene Length: 678 bp
• Protein Length: 225 aa
• Translation table: 11
• GC content: 55%
• IMG OID: 639779656
• Product: DNA repair protein RadC
• Protein accession: YP_926208
• Protein GI: 119773468
• COG category: [L] Replication, recombination and repair
• COG ID: [COG2003] DNA repair proteins
• TIGRFAM ID: [TIGR00608] DNA repair protein radc

Plasmid Coverage information

• Num covering plasmid clones: 6
• Plasmid unclonability p-value: 0.000320995
• Plasmid hitchhiking: Yes
• Plasmid clonability: hitchhiker

Fosmid Coverage information

• Num covering fosmid clones: 15
• Fosmid unclonability p-value: 1
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGGCAATTC GGGACTGGCC TGAGGGAGAG GGGCCACGTG AAAAATTATT GCAGCGGGGC 
GCGGCTCATT TATCGGACGC AGAATTACTG GCAGTGCTGC TGCGAAATGG GGTTAGTGGT 
CAAAATGCGG TTGACCTGGC GAGGGAACTT ATCGGTGAAT TTGGTGGATT ACGGCCTTTA 
TTCAGTGCAA CTAAGCAGCA GGTGTGTCGA CTCCAGGGCC TGGGTCCGGT AAAATACGCC 
CAGCTTCAGG CTTCTGCTGA GCTTGCCAGG CGACTGGCGG GTGAATCTTT GCAGCGGGGC 
GCTGTGCTGA CAAGTCCGGA TTTGACCCGG GATTACCTGA GATTTCAGTT GGCAGACAGA 
GCCTATGAGG TATTTGCCGT CTTGCTGCTC GACAGCCAAC ACAGGGTCAT CCAGTTTGTC 
GAATTGTTTC GAGGCACCAT AGATGCAGCA TCGGTATATC CCCGGGAGCT GGTGTCACTG 
GTGTTGGAAA AGCGGGCGGC AGCGGTCATC GTCTGCCATA ACCATCCGTC TGGGGTCGCT 
GAACCCAGCC AAGCCGACAG ACGGATCACT GAAAGATTGA AAAATGCCTT GGCAACCATA 
GATGTATCCT TACTGGATCA CATGGTTGTA GGGGACCGGG AGATAGTCTC CTTTGCCGAG 
CGAGGGTGGA TTGGATGA 

 

Protein sequence

MAIRDWPEGE GPREKLLQRG AAHLSDAELL AVLLRNGVSG QNAVDLAREL IGEFGGLRPL 
FSATKQQVCR LQGLGPVKYA QLQASAELAR RLAGESLQRG AVLTSPDLTR DYLRFQLADR 
AYEVFAVLLL DSQHRVIQFV ELFRGTIDAA SVYPRELVSL VLEKRAAAVI VCHNHPSGVA 
EPSQADRRIT ERLKNALATI DVSLLDHMVV GDREIVSFAE RGWIG