Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sama_0261 |
Symbol | |
ID | 4602517 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella amazonensis SB2B |
Kingdom | Bacteria |
Replicon accession | NC_008700 |
Strand | - |
Start bp | 299560 |
End bp | 301215 |
Gene Length | 1656 bp |
Protein Length | 551 aa |
Translation table | 11 |
GC content | 56% |
IMG OID | 639779590 |
Product | AMP-dependent synthetase and ligase |
Protein accession | YP_926142 |
Protein GI | 119773402 |
COG category | [I] Lipid transport and metabolism |
COG ID | [COG1022] Long-chain acyl-CoA synthetases (AMP-forming) |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 0 |
Plasmid unclonability p-value | 0.000000998406 |
Plasmid hitchhiking | No |
Plasmid clonability | unclonable |
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Fosmid Coverage information |
Num covering fosmid clones | 19 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCAAGCCA CTATCAAGAC TCCTGTAGAG ATGCTCGACC ATTGGGTACA AAACCAGGGT GACAAGGTTT ACTTGCGCCA GCCGGTAAAC GGCCAATACC GTGATTTCAG CTGGCGGGAT GTGAAACGCC AGATGGAGCA AATTGCCGGC TCGCTCAGGC ATCTTGGTCT TGTGCCCGGA GACAAGGTCG CCGTGCTGTC CAAGAACTGC GCCGAGTGGT TTATTACCGA CCTGGCGTTA ATGCACGGCG GTTATATCAG CGTACCCATT TATCCTACCG CCAATGCCGA TACCATCCGC TACGTGCTGG AGCACAGTGG TGCCAAGGCC ATTTTTATCG GCAAGCTGGA CCACTGGGCC GAGCAGGAAG CCGGTGTTGG CGGCAGTATT TTGCGCATGT CCTTCCCCTA CGACACCATG CCGACCCAAT ACGGCTGGGA CCAGTTGATG ACCATGGGAC AACCGCTGAC AGACGCACCG CTGCCTGCCA TGGAAGATAC CATGACGCTG ATTTACACCT CGGGCTCCAC TGGCAGCCCG AAGGGTGCAA TTCAAACCTT TGGCAGCTAT TGCTGGACCT GTACTGCCGT GGTGCGCGAT CTCAAAACCG ACGGTGACGA TAGATTGCTG TCGTACCTGC CACTGGCCCA TATCACCGAG CGGGTCGCCA TTGAAGGGTC ATCCTTCTAT TCCGGCAGCG CGGTGGCCTT TGTCGAGAGT CTGGATACCT TCGTCGCCGA CGTGCAGCGC ATGCGACCAA CCGTATTCTT CTCGGTGCCA CGTCTTTGGA CCCTGTTCCA GAAAAACATT ATCGACAAGG TGGGTTTCGA CAAGCTCAAC TTCCTGCTCA AGCTGCCCCT CATCAGCTAT CTGGTAAAAC GCAAAATTCA CAAGGGACTT GGCCTGGATA AGTGCCGCTT GCTGGGCTCA GGTTCTGCGC CTATCCCGCC ATCACTCATT CAGTGGTACC ACAGCATAGG GCTGAATATC TGCGAAGCCT GGGGCATGAC CGAAAACTGT GCCTACTCCA TCATCAATTA TCCCTTTGAT GCCAGCAAAA TCGGTACCGT GGGAAAGCCG GTGGAAGGCT GCCTGGTGCG CCGCAGCGAA AGCGGTGAAC TCATGGTCAA GAGTCCCGGG CTGATGAGTG GCTACTACCA GCAGCCCGAA GCCTCCGCTG CCGCCTTCGA TGAAGATGGC TTTTTCCACA CCGGCGATCT CTGCGCCATC GATGAAGATG GTTGCGTCAG CATCACCGGC CGGGTGAAAG ACAACTTTAA AACCGCCAAG GGCAAGTACG TGGCCCCAGT GCCTATCGAG CGCAAGCTGG CTCAGGATCC CCATGTGGAG CTGATTTGCG TGATTGGCTC GGGTCTGCCC CACCCCATCG CACTGGTGCA ACTGTCAGAC GGTGCCACCC TGCAAGCCCG GGAAGAGGTT CGCGCTTCCA TCAAGGCCAC CCTGGATGCG GTGAATCCTC ATCTGGAATC CCACGAAACC GTGGATGCCG TGGTGGTAGT CAACGCCCCC TGGACCATTG AAAACGATGT GCTCACCCCA ACGCTGAAAA TCAAACGCCA TGTGCTGGAA GCCAGATACA GTGCCAAGGT AGATGGCGTT CGTGGTGCCA AGGTGGTGTG GGAAGACGAG ATTTAA
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Protein sequence | MQATIKTPVE MLDHWVQNQG DKVYLRQPVN GQYRDFSWRD VKRQMEQIAG SLRHLGLVPG DKVAVLSKNC AEWFITDLAL MHGGYISVPI YPTANADTIR YVLEHSGAKA IFIGKLDHWA EQEAGVGGSI LRMSFPYDTM PTQYGWDQLM TMGQPLTDAP LPAMEDTMTL IYTSGSTGSP KGAIQTFGSY CWTCTAVVRD LKTDGDDRLL SYLPLAHITE RVAIEGSSFY SGSAVAFVES LDTFVADVQR MRPTVFFSVP RLWTLFQKNI IDKVGFDKLN FLLKLPLISY LVKRKIHKGL GLDKCRLLGS GSAPIPPSLI QWYHSIGLNI CEAWGMTENC AYSIINYPFD ASKIGTVGKP VEGCLVRRSE SGELMVKSPG LMSGYYQQPE ASAAAFDEDG FFHTGDLCAI DEDGCVSITG RVKDNFKTAK GKYVAPVPIE RKLAQDPHVE LICVIGSGLP HPIALVQLSD GATLQAREEV RASIKATLDA VNPHLESHET VDAVVVVNAP WTIENDVLTP TLKIKRHVLE ARYSAKVDGV RGAKVVWEDE I
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