| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_0249 |
|---|
| Symbol | |
|---|
| ID | 4602505 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella amazonensis SB2B |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008700 |
|---|
| Strand | + |
|---|
| Start bp | 273781 |
|---|
| End bp | 274368 |
|---|
| Gene Length | 588 bp |
|---|
| Protein Length | 195 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | 639779570 |
|---|
| Product | thiol:disulfide interchange protein DsbE |
|---|
| Protein accession | YP_926130 |
|---|
| Protein GI | 119773390 |
|---|
| COG category | [C] Energy production and conversion
[O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG0526] Thiol-disulfide isomerase and thioredoxins |
|---|
| TIGRFAM ID | [TIGR00385] periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 3 |
|---|
| Plasmid unclonability p-value | 0.00000439666 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 6 |
|---|
| Fosmid unclonability p-value | 0.0814287 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAGAAGC TGGTCTTATT CATTCCATTG GTACTGTTTC TGGGGATGGG GATATTCCTC
TACAAGGGCT TGTTCCTGAA TCCTCAAAAA CTGGAGTCGG CGCTTGAAGG TAAGCCTATT
CCGGCGTTTC AGTTAGAGAA ACTGGAAACG CCCGGTGAGA TGATCACTCA GGAAGACCTG
AAAGGTCAGG TGTCCCTGTT GAACGTCTGG GCAACCTGGT GTCCATCCTG TAAGTATGAG
CATCCGTTTT TGATGACGTT GACCCGTCAG AAGTTGGTGC CTATTTACGG TATCAATTAT
CGCGATGAGC GTGCAGAAGC TATTCGCGAG CTTCGCCATC AGGGTGACCC CTATGTACTG
AACATCTTCG ATAAAGATGG TCGTCTAGGG TTGGACCTGG GGGTGTATGG TGCGCCGGAA
ACGTTTCTGG TTGACCATAA GGGTATTATT CGCTTCCGCT TTGCCGGTCC GGTTGATCAG
CGTGTGTGGA GTGAGACTCT TTACCCCATG GTTCAGCAGT TGCAGCAGGA GGCCGCTGCG
GAAGCGGCCG CTTCCGGTAA AGCCACTGCG ACAGGAGCCG CCTCATGA
|
|---|
| Protein sequence | MKKLVLFIPL VLFLGMGIFL YKGLFLNPQK LESALEGKPI PAFQLEKLET PGEMITQEDL
KGQVSLLNVW ATWCPSCKYE HPFLMTLTRQ KLVPIYGINY RDERAEAIRE LRHQGDPYVL
NIFDKDGRLG LDLGVYGAPE TFLVDHKGII RFRFAGPVDQ RVWSETLYPM VQQLQQEAAA
EAAASGKATA TGAAS
|
|---|
| |