| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_0247 |
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| Symbol | |
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| ID | 4602503 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | - |
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| Start bp | 270148 |
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| End bp | 271401 |
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| Gene Length | 1254 bp |
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| Protein Length | 417 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 639779568 |
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| Product | cytochrome c-type biogenesis protein CcmH |
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| Protein accession | YP_926128 |
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| Protein GI | 119773388 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG4235] Cytochrome c biogenesis factor |
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| TIGRFAM ID | [TIGR03142] cytochrome c-type biogenesis protein CcmI |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.00131868 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 4 |
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| Fosmid unclonability p-value | 0.0142008 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACCACAT TCTGGATTTT GATTGCATTT GTTGTGCTGA TCGGCCTCAT GCTGATCTGG
GTGCCCCACT TCCGGCAGCA GCGTCTGTTA GAGGCTGAAG AAGCTGGCGT GCGTAAGCAA
ACCAACCTTG AACTCTTTAA TGAACGTTTG GCGATTCTCG AAAAAGAACT GGCTGAAGAT
CTGTTGGATA ATCAGGAATT CGAGGCGCTG AAGAAAGAAC TCGAAATTAG CCTGCTGCAA
GACATCAAGC AGGGCAGTGA CGAGTCACTG GTCAACACAG TTAAACCCAA AGGGTTGCTG
TGGCCTGTGG TGATGTCCGT TACGCTGCTT GGTATTTCCG GCTACATGTA TCAGCACCTT
GGCCAATATG AGAATGTGGC CAATCCTCCC CGCGCCGCCA ATCCCCATGA AGGTATGACC
GCCGAACAAA TTATGTCGCA GCGGGTACAA ATGATGGAAA TGGCAGTACA GGCTGAACCC
GATAACAGCC AGGCCTGGTT TAATCTGGGT CACGCCTATA TTTCTGCGAA CCGGTTTGAC
GAAGCCGTAA ACGCTTTCGA TAAGGTAATG GCACTGGTAG GTACCCATGC CGAGTTGCTG
GGCCCTAAAG CCACCGCCCT TTATTACAAG AACAATCAAC AGATGTCGGC TGAGATACAG
GCATTAGTCG ACCAGTCTCT GGCACTCGAT CCTCAGGATC CATCGACTCT GCTGTTGGTG
GGTATGGATT CTTTCTTTAC CGCCAACTAC CAAAAGGCTA TCGACGCCTG GCAAAGCATA
TTGTCTACCC AACGCACCGA TATCGATAGA ACAGCACTGA TGAACGCCAT CGAAACCGCC
CGTATGAAGA TGGCGGCCGA GTCAGGCGAG ATGCCTCAGG ACAGCGTTCA CCAACCTGTT
GCCAAGGCAG TGCCAACGGT AACGGTTCAA ATTTCGGTAT CACCTGAGCT TGCCGCCAAT
GTCAGCGATT CCGACATGCT GTTTATCTTC GCCCGTGCTA CCGAAGGCCC GAAAGTGCCA
CTGGCGGCGA CCAAGATCAG CGCCAAAGCA CTGCCTGCCA CTATCACTCT GGACGATAGC
ACCAATATGG GCGGCGATGT GAAGCTCAGC AGCGCCAAGC AGGTTGAGAT CATTGCGGTA
TTGTCGAAGC ACGGCAGCGT TAAGCCTCAA TCAGGAGACC TTAAAGGCAG CCTTAATGGG
GTCGATGTGG GTGGCGAGTC TGTGAACCTG GTACTGGATA CCTTGGTGCA ATAA
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| Protein sequence | MTTFWILIAF VVLIGLMLIW VPHFRQQRLL EAEEAGVRKQ TNLELFNERL AILEKELAED
LLDNQEFEAL KKELEISLLQ DIKQGSDESL VNTVKPKGLL WPVVMSVTLL GISGYMYQHL
GQYENVANPP RAANPHEGMT AEQIMSQRVQ MMEMAVQAEP DNSQAWFNLG HAYISANRFD
EAVNAFDKVM ALVGTHAELL GPKATALYYK NNQQMSAEIQ ALVDQSLALD PQDPSTLLLV
GMDSFFTANY QKAIDAWQSI LSTQRTDIDR TALMNAIETA RMKMAAESGE MPQDSVHQPV
AKAVPTVTVQ ISVSPELAAN VSDSDMLFIF ARATEGPKVP LAATKISAKA LPATITLDDS
TNMGGDVKLS SAKQVEIIAV LSKHGSVKPQ SGDLKGSLNG VDVGGESVNL VLDTLVQ
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