| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_0237 |
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| Symbol | rpsD |
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| ID | 4602493 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | + |
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| Start bp | 263433 |
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| End bp | 264053 |
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| Gene Length | 621 bp |
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| Protein Length | 206 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 639779558 |
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| Product | 30S ribosomal protein S4 |
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| Protein accession | YP_926118 |
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| Protein GI | 119773378 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0522] Ribosomal protein S4 and related proteins |
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| TIGRFAM ID | [TIGR01017] ribosomal protein S4, bacterial/organelle type |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.00000435795 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 0 |
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| Fosmid unclonability p-value | 0.0000101717 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | unclonable |
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| |
Sequence |
| Gene sequence | ATGGCAAGAT ACTTGGGTCC CAAGCTCAAG CTCAGCCGCC GGGAAGGTAC CGACCTTTTC
CTGAAAAGCG GTGTGAGAGC AATTGATTCG AAGTGTAAGC TGGAAACCGC TCCAGGTCAG
CACGGTGCGC GCAAGCCACG TCTGTCTGAA TACGGTACTC AGCTGCGTGA GAAGCAAAAA
GTTCGTCGTA TTTACGGTGT GCTGGAAAAG CAGTTCCGTA ACTACTATAA GGAAGCTGCA
CGTCTGAAAG GCAACACCGG TGAAAACCTG TTGCAACTTT TGGAAACCCG TCTGGATAAC
GTAGTTTATC GTATGGGCTT TGGCTCAACT CGTGCCGAAG CACGTCAGCT GGTTAGCCAT
AAGTCTGTTA TGGTAAACGG TCGTGTTGTT AACATCCCTT CATTCAAAGT GTCTGCGAAT
GATGTAGTAA GCATCCGTGA GAAGTCACGC ACTCAAGCCC GTATCAAAGC GGCTTTGGAA
GTGGCTGCCC AGCGTGAGAA GCCTACTTGG GTTGAAGTAG ACGCCGCTAA GATGGAAGGT
GCTTTCAAGC GTCTGCCAGA GCGTAGCGAT TTGTCTGCGG ATATTAACGA ACAGCTGATC
GTCGAGCTTT ACTCTAAGTA A
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| Protein sequence | MARYLGPKLK LSRREGTDLF LKSGVRAIDS KCKLETAPGQ HGARKPRLSE YGTQLREKQK
VRRIYGVLEK QFRNYYKEAA RLKGNTGENL LQLLETRLDN VVYRMGFGST RAEARQLVSH
KSVMVNGRVV NIPSFKVSAN DVVSIREKSR TQARIKAALE VAAQREKPTW VEVDAAKMEG
AFKRLPERSD LSADINEQLI VELYSK
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