Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sama_0228 |
Symbol | rplF |
ID | 4602484 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella amazonensis SB2B |
Kingdom | Bacteria |
Replicon accession | NC_008700 |
Strand | + |
Start bp | 259004 |
End bp | 259537 |
Gene Length | 534 bp |
Protein Length | 177 aa |
Translation table | 11 |
GC content | 51% |
IMG OID | 639779549 |
Product | 50S ribosomal protein L6 |
Protein accession | YP_926109 |
Protein GI | 119773369 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0097] Ribosomal protein L6P/L9E |
TIGRFAM ID | [TIGR03654] ribosomal protein L6, bacterial type |
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Plasmid Coverage information |
Num covering plasmid clones | 1 |
Plasmid unclonability p-value | 0.0000000431714 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | 0 |
Fosmid unclonability p-value | 0.00000804298 |
Fosmid Hitchhiker | No |
Fosmid clonability | unclonable |
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Sequence |
Gene sequence | ATGTCTCGTG TAGCAAAAGC ACCTGTATCT ATTCCTGCCG GCGTAGAGGT GACCTTAAAT GGTCAGGAAA TCACCGTTAA AGGCGGCAAA GGTACTCTGA CTCGCGTAAT CAACAGCGCT GTTGCAGTGA CTGTTGAAGA TGGCGCTATC AAGTTTGCCC CCGTAGAAGG CGTTGTTAAC GCCTGGGCTC AAGCTGGTAC TGCCCGCGCT CTTATCAACA ACATGGTTGT TGGTGTATCT CAGGGTTTTG AGAAGAAGCT GCAGCTGGTT GGTGTAGGTT ATCGTGCCAA AGTGGCCGGT AGCGACGTCG ATCTGTCTCT GGGTTTTTCT CACCCACTGG TACACAAACT TCCAGCTGGC GTTACTGCTG AATGCCCAAG CCAAACCGAA ATCGTTCTGC GTTCTATCGA CAAAGAACTG GTTGGTCAAG TGGCTGCTGA GATTCGTGGC TATCGTCCAC CAGAGCCTTA CAAGGGCAAG GGTGTTCGCT ACGCTAACGA AGAAGTACGC CGTAAAGAGG CTAAGAAGAA GTAA
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Protein sequence | MSRVAKAPVS IPAGVEVTLN GQEITVKGGK GTLTRVINSA VAVTVEDGAI KFAPVEGVVN AWAQAGTARA LINNMVVGVS QGFEKKLQLV GVGYRAKVAG SDVDLSLGFS HPLVHKLPAG VTAECPSQTE IVLRSIDKEL VGQVAAEIRG YRPPEPYKGK GVRYANEEVR RKEAKKK
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