Gene Sama_0208 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSama_0208 
SymbolrpsL 
ID4602464 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella amazonensis SB2B 
KingdomBacteria 
Replicon accessionNC_008700 
Strand
Start bp247158 
End bp247532 
Gene Length375 bp 
Protein Length124 aa 
Translation table11 
GC content53% 
IMG OID639779529 
Product30S ribosomal protein S12 
Protein accessionYP_926089 
Protein GI119773349 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0048] Ribosomal protein S12 
TIGRFAM ID[TIGR00981] ribosomal protein S12, bacterial/organelle 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.000000137299 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.00000763444 
Fosmid HitchhikerNo 
Fosmid clonabilityunclonable 
 

Sequence

Gene sequence
ATGGCAACTG TAAATCAGTT GGTACGTAAG CCACGTGCAC CTAAAGTCGA CAAGACTAAC 
GTGCCAGCGC TGGAAGCGTG CCCACAGAAG CGTGGTGTTT GTACTCGTGT GTACACCACC
GCCCCTAAGA AACCAAACTC TGCACTGCGT AAAGTAGCTC GTGTGCGTTT GACCAACGGT
TTTGAAGTTA CTTCATACAT CGGCGGTGAA GGCCACAACC TGCAGGAACA CAGTGTGATT
CTGATCCGTG GCGGTCGTGT TAAAGACCTG CCAGGTGTGC GTTATCACAC CATTCGTGGC
GCTCTGGACT GTGCTGGTGT GAACGCTCGC CGCCAGGCTC GTTCTAAGTA CGGTGCCAAG
CGTCCTAAGT CTTAA
 
Protein sequence
MATVNQLVRK PRAPKVDKTN VPALEACPQK RGVCTRVYTT APKKPNSALR KVARVRLTNG 
FEVTSYIGGE GHNLQEHSVI LIRGGRVKDL PGVRYHTIRG ALDCAGVNAR RQARSKYGAK
RPKS