| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_0168 |
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| Symbol | |
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| ID | 4602424 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | + |
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| Start bp | 197297 |
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| End bp | 198220 |
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| Gene Length | 924 bp |
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| Protein Length | 307 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 639779479 |
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| Product | general secretion pathway protein C |
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| Protein accession | YP_926049 |
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| Protein GI | 119773309 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3031] Type II secretory pathway, component PulC |
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| TIGRFAM ID | [TIGR01713] general secretion pathway protein C |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.0176873 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGATTTAT TGGATAAAGT TATCGCCCGG GCAGGAAGCA TCCCGCACAA GCCTCTGAGT
CGGCTGGTCT TTTGGCTGGC TTTCGCGGCT TGTTGCTATC TGGCAGCTCA GATCAGCTGG
CGCTTGGTAC CTGCCCAGAC TGAATCAGCG GCCTGGCGTC CCAATCCCCC TTCCTCCGGT
ACCAACGGCA ACAGCGGTAT CGATGTCGAT GGTCTTAAGT CTCTGTCTCT CTTTGGTAAA
GCTGACACCA GTAAACCCAA AGAGCAGCCG GTGCAGGAGG TGATTACCGA TGCACCCAAA
ACCTCGTTGT CGATTGTGCT GACCGGTATC GTGGCCTCCA CCGCCGAACA AAAAGGCTTG
GCTATCATCG AGTCGGGTGG CAGTCAGGAA ACTTACGAGC TGGGTGAAAA AATCAAGGGC
ACTTCGGCTT CACTCAAGGA AGTGTATGCA GACCGGGTGA TTATCACCAA CGCGGGACGC
TACGAAACCC TGATGCTGGA CGGTGTGCCA TACACCAGCG GCGCCAGTAC ACCCACGATA
AACAACACTC GCCAGCGCGG CTTTGAAGAT GAGGTACGCC GCATCGACAA GCGCCGTGAT
GAAGATGTCG CGGCAGAGCT TTCATCCTCA CGGGACGAAC TGCTCGCCGA CCCAAGCAAG
ATAACCGATT ACATTTCGAT TTCGCCGGTT ACCCAGGGCG AAGAGCTGGT GGGTTACCGC
TTGCAGCCCG GTAAAGATCC CGGACTCTTT TCCCAGGCAG GTCTCAAACC AGGAGATCTG
GCCAAATCCA TTAACGGCTA TGATTTGACT GTCAGCACCC AGGCTCTGGA GCTGATGGGC
CAGCTGACTG AACTGACCGA AATCTCCGTC ATGGTAGAAA GGGAAGGTCA GCTGATTGAA
ATCATGTTCA GTTTGCCGCA ATAA
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| Protein sequence | MDLLDKVIAR AGSIPHKPLS RLVFWLAFAA CCYLAAQISW RLVPAQTESA AWRPNPPSSG
TNGNSGIDVD GLKSLSLFGK ADTSKPKEQP VQEVITDAPK TSLSIVLTGI VASTAEQKGL
AIIESGGSQE TYELGEKIKG TSASLKEVYA DRVIITNAGR YETLMLDGVP YTSGASTPTI
NNTRQRGFED EVRRIDKRRD EDVAAELSSS RDELLADPSK ITDYISISPV TQGEELVGYR
LQPGKDPGLF SQAGLKPGDL AKSINGYDLT VSTQALELMG QLTELTEISV MVEREGQLIE
IMFSLPQ
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