Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sama_0161 |
Symbol | |
ID | 4602418 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella amazonensis SB2B |
Kingdom | Bacteria |
Replicon accession | NC_008700 |
Strand | - |
Start bp | 190244 |
End bp | 192076 |
Gene Length | 1833 bp |
Protein Length | 610 aa |
Translation table | 11 |
GC content | 56% |
IMG OID | 639779473 |
Product | carboxypeptidase |
Protein accession | YP_926043 |
Protein GI | 119773303 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG2866] Predicted carboxypeptidase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 19 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 20 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCCATTCT TCCCCATAAA ATCGTCCCTC ACCTTACTTT CTTTTGCCTT GCTGAGCGCT GCGCCCGCTT GGTCTGCCCC CGTTGTTGCC AATCAATTCG TTAACGATGC CGTGTTGCCC CCGATTGAAA CCTGGCAAGG TGCCAGTGAA GCCCTGATGC TGGCGCGCGA CAGTAAATGG GCGACTCCTT TTGAGCAGAG TGGCGGCCTC AAGAGTCCCG ACTACGAAGC CACCATGGCC TGGCTCGACA AGTTGGTTAA ACGCAGCAAA TATCTGTCAA AGGTGAGTCT GGGCAAGAGC CCTCAGGGGC GTGACATCTG GATGATTGTT GCCAGCAAAG AGGGGGCTGA TACCCCGGGC AAGCTGGAAA AACAAGGCAA GCCCAGTGTG CTGGTGCAGG CTGGCATCCA TTCCGGTGAA ATCGACGGTA AAGACGCGGG CATGATGCTG CTGCGGGATA TCGAAATGGG GGGCAAGAGT GCCCTGCTGG ACAAGGTAAA TCTGTTGTTT GTGCCCATCT TCAGTGTGGA TGCCCACGAG CGCGCCAGCG AATATAACCG GGTAAACCAG CGCGGCCCCG TCACCATGGG ATGGCGCACC AATGCGCGCA ACCTTAACCT CAACCGTGAC TACGCCAAGG CCGATACCAA AGAGATGCAG TTGATGCTGA CCGCCATCAA CGACTGGAAC CCCAGCCTCT ATATCGATGT GCACGTCACC GATGGCATAG ACTACCAGTA CGATGTGACC TTCGGTTACA ACCTGAGCCA GGGATTGAGT CCGGCCGCGT TTGCCTGGCT CGACGGTGAA TATCGCCCGG ACATAGAATC GGCGTTGACC CGCGCAGGTC ATATTCCCGG TCCTCTGGTG TTTGCCCTGG ATAACAGCGA TATGACCAGG GGCATGTCGC TGTGGAGTGC ATCGCCCCGC TACTCCAATG GCTATGGTGA TGCCCGCCAC CTGCCGACCA TATTGATAGA AAACCACAGC CTCAAGCCCT TCAAACAGAG GGTACTGGGC ACGTACGTGA TGCTGGAACA AACCCTGAAG ACGGTGGGCG AGCAGGCAAC CGCGCTCAAG GCCGCCATCA TGGCCGACAG CTTTGCCTTC CCTGAGCAAG TCACCCTGAC CTGGAAAGAA GCACTTCAGC CAAAGGGGTG GGACTTCAAA GGCATAGGTT ATCGGGTGGA AAAAAGCCCC ATTTCCGGTG CCGATGTGGT GCGCTGGACG GGCGAGCCCG TGCTGTACGA ACAGCTGCCG GTTATCGGCA ATACAGTGCC CGATATCAGC GTCAGCCGCC CCGAGGCCTA TTATGTGTTG CCCCAATGGC AGGAAGTCAT AGCCAAGCTG GAAACCCACG GTATCCGCTA TGAGCGACTG CAGCAACCAC AGCAACTGAC ACTGGGTCAG TACAGTTTCA GCAACCCCCA ATTTGGCGCC AAAGACTATG AAGGCCGCCA GCGGGTCAGT GCCGACGTCA GCCTGAACAA GGTTGAAACC ACATTACCTG TTGGCACCAT CAAAATCAGC ACAGAGCAGG CACTGGGCGA CCTTGCCATT TTGCTGCTGG AACCCCAGTC CCCGGACTCA TTGCTGCAAT GGGGCCTGTT CAATCCCATC TTCACCCGCA CCGAATACAT GGAGCAGTAT GCGGTAGAAC CCATGGCGGC GCGGATGTTG GCCGAAGATC CTGAGCTGAA AAAGGCTTTT GACGATGCTC TCAAGGATCC GGACTTTGCC GCCGATCCAA ACGCCCGCCT GCGTTGGTTC TACGAAAAGA GCCATTATTA CGACCAGGAA TACCTCAAGT ACCCTGTTTA TCGCAGCTTC TGA
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Protein sequence | MPFFPIKSSL TLLSFALLSA APAWSAPVVA NQFVNDAVLP PIETWQGASE ALMLARDSKW ATPFEQSGGL KSPDYEATMA WLDKLVKRSK YLSKVSLGKS PQGRDIWMIV ASKEGADTPG KLEKQGKPSV LVQAGIHSGE IDGKDAGMML LRDIEMGGKS ALLDKVNLLF VPIFSVDAHE RASEYNRVNQ RGPVTMGWRT NARNLNLNRD YAKADTKEMQ LMLTAINDWN PSLYIDVHVT DGIDYQYDVT FGYNLSQGLS PAAFAWLDGE YRPDIESALT RAGHIPGPLV FALDNSDMTR GMSLWSASPR YSNGYGDARH LPTILIENHS LKPFKQRVLG TYVMLEQTLK TVGEQATALK AAIMADSFAF PEQVTLTWKE ALQPKGWDFK GIGYRVEKSP ISGADVVRWT GEPVLYEQLP VIGNTVPDIS VSRPEAYYVL PQWQEVIAKL ETHGIRYERL QQPQQLTLGQ YSFSNPQFGA KDYEGRQRVS ADVSLNKVET TLPVGTIKIS TEQALGDLAI LLLEPQSPDS LLQWGLFNPI FTRTEYMEQY AVEPMAARML AEDPELKKAF DDALKDPDFA ADPNARLRWF YEKSHYYDQE YLKYPVYRSF
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