Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sama_0117 |
Symbol | |
ID | 4602374 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella amazonensis SB2B |
Kingdom | Bacteria |
Replicon accession | NC_008700 |
Strand | - |
Start bp | 131236 |
End bp | 132051 |
Gene Length | 816 bp |
Protein Length | 271 aa |
Translation table | 11 |
GC content | 56% |
IMG OID | 639779429 |
Product | formamidopyrimidine-DNA glycosylase |
Protein accession | YP_925999 |
Protein GI | 119773259 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG0266] Formamidopyrimidine-DNA glycosylase |
TIGRFAM ID | [TIGR00577] formamidopyrimidine-DNA glycosylase (fpg) |
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Plasmid Coverage information |
Num covering plasmid clones | 21 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 9 |
Fosmid unclonability p-value | 0.481524 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCCAGAAT TACCGGAAGT TGAAGTGACC CGCCAGGGCA TTGCGCCCCA CCTGGAAGGC AACCGCGTTG AAGCCCTGAT TGTGCGTAAT GCCAACCTGC GCTGGCCAGT GCCAGAACTA GCACAAAACA TTGTTGGCCA AACCATTTTG GGTGTCAGAC GCCGGGCCAA GTATTTGCTG ATAGATACAC AGGCGGGCAC CACTATTGTG CATTTGGGCA TGTCCGGCAG CCTGAGGGTG CTGCCAAAAA ATACCCCTGT CGAGAAACAT GATCACATTG ATCTGGTGAT GCAAAATGGC CGGGTATTGC GTTTTAACGA TCCCCGCCGC TTCGGCGCTT GGCTCTGGAG TGAACTGCCG GAAGCGGCCC ACCCGCTGCT GGAAAAGCTG GGACCTGAGC CGCTATCGGC CGCTTTCCAT GCCGATTACC TGCAAGCCGC ACTCAAAGGT AAGAAGAAAG CCATCAAGCT GTGCCTGATG GACAACGCCA TCGTGGTGGG CGTGGGGAAT ATCTACGCCA ATGAAGCCTT GTTTGCCGCC GGTATTCACC CTGAGGCAGA GGCGGGCAAA GTCGATGCCG AGCGCCTTAC CCTGCTCACT GCTGAAGTTA AGACGATACT GACGCAGGCT ATAAAACAAG GCGGCACCAC TCTCAAGGAC TTTACCAATG CCGACGGCAA GCCCGGTTAC TTTGCTCAAA AATTACATGT GTATGGCCGC GGCGGCGAGA CCTGCACCGA GTGCGGCCAC CTGCTGAGTG AAATTCGCCT GGGTCAGCGC ACTACGGTAT TTTGCAGCCT CTGCCAGACA AAATAA
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Protein sequence | MPELPEVEVT RQGIAPHLEG NRVEALIVRN ANLRWPVPEL AQNIVGQTIL GVRRRAKYLL IDTQAGTTIV HLGMSGSLRV LPKNTPVEKH DHIDLVMQNG RVLRFNDPRR FGAWLWSELP EAAHPLLEKL GPEPLSAAFH ADYLQAALKG KKKAIKLCLM DNAIVVGVGN IYANEALFAA GIHPEAEAGK VDAERLTLLT AEVKTILTQA IKQGGTTLKD FTNADGKPGY FAQKLHVYGR GGETCTECGH LLSEIRLGQR TTVFCSLCQT K
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