| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_0111 |
|---|
| Symbol | |
|---|
| ID | 4602368 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella amazonensis SB2B |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008700 |
|---|
| Strand | + |
|---|
| Start bp | 124137 |
|---|
| End bp | 125621 |
|---|
| Gene Length | 1485 bp |
|---|
| Protein Length | 494 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 53% |
|---|
| IMG OID | 639779423 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_925993 |
|---|
| Protein GI | 119773253 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.730395 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 5 |
|---|
| Fosmid unclonability p-value | 0.0470607 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAGTACA TGTCGTTATC TGCGCTGAGC TTGGCGCTGC TGTCTGCGTC AACTCTGGCG
GCACCTTGGG TCGATGCATC CGATATTTAT TTGCGGGCCG ATATTCAAGC ATTGGCCGAT
GCAGGTGTTA TCACAATGCC AGTGAATACG TTTCCGCTGA TGTGGTCGGG CATCGGGGTG
GATTTGAACA AAGCCGAGCC CTCGTTACTG ACGCCGGAAA TGGCCGCCGC CTATGCGAGG
GTGAACTACT ACTATCGCCA GGCGGTTGAA AACCGGGGTA ACACACGACT TAAAGCGGTT
GGCGCAACCG ATGAAGCCAG ATTCCAACAT TTCGGCAGTG ACTACCGTGA GCAGGGTGAA
CTCAAAGCCT CCCACGAGTA CATGGATAAT CGTTTTGCGT TCAAGGTGTC TGCGACGGCA
GCCTACGATG CCCAGGATGA TAAAGATTTC CGTCTGGATG ACTCCTGGAT GTCGTTGGTA
TTGGGGAATT GGGTGTTTAC CGCAGGTACT GTAGAACAGT GGTGGGGCCC GGGATTCGAT
ACCGCGCTGC ACAAGTCCAA TAACGCCCGC CCCATGCCGT CACTGATGCT GAGCCGCAAT
AACGCCGCTG CCTTTGAAAC GCCTTGGCTG TCGTGGATGG GTCCCTGGAC GTTAACCACG
GGGATCAGCT GGATGAATGA TAACCGTGCC GTAGAGGACA CCCTGCTGTG GAATTTTCGC
GGAACCCTAA AGCCCGTTCA ACAGCTGGAA ATAGGTGCCT CCTGGACAGT GCAGATGTGC
GGCGAAGGCC AGGACTGTGG TCTGGGCACC TTCTGGGACA CGATCTCCGG TGGCGGTGAA
TGTGCCGATG GCAGCCTGGA TTGTGATTCG GCTCAAAACT CGCGTTTGGG CAACCAGATG
GCAGGTTGGG ATATTCGCTA CGCCGATACG TGGTTTAATG TGCCCGTTGG CCTCTATCTG
GAGCGTACCT GCGAAGACTC AAGCGGCCCG ATGCCATGGG ACTTGGCTGA TTGTGCCAAG
CTGGCGGGTG TTGACACCCG ATTTGGATTT AAAGATCACC AGTATAAGCT GTTTTTGGAA
TATACGGATA CCTTAGTGGC TTGTGGCAGT GATGATAATG TATTTAACTG CTTCTATGAG
CACACCACTT ATCTTTCCGG TTCCCGCTAT TATCGGCGTT CTTTGGGCTC AACCTACGAC
AGTGACGCCG AAACCTGGGT GCTGGGCCTG ATAGGTCAGT TTGGTGACAG CAAAGGCATT
AATGCCTATC TGCGGTATGC CCAGCTGAAC AAAGACGGCA AAAACCACAG CAGCGAGTGG
ACACCACAGC CGGAGAAGGA AGACCTGCTG ATGCTGGAAG TCTCTTACCG TCAACCAATG
TTCAAAGGTA TGGTCACTCT CGGAGGCACA GTCTCCCGCT CAGAGTTCGA CACAAAAACC
GATAATGATG CCACCCTCTA TGGCAGTTAT GAATATCGAT TCTGA
|
|---|
| Protein sequence | MKYMSLSALS LALLSASTLA APWVDASDIY LRADIQALAD AGVITMPVNT FPLMWSGIGV
DLNKAEPSLL TPEMAAAYAR VNYYYRQAVE NRGNTRLKAV GATDEARFQH FGSDYREQGE
LKASHEYMDN RFAFKVSATA AYDAQDDKDF RLDDSWMSLV LGNWVFTAGT VEQWWGPGFD
TALHKSNNAR PMPSLMLSRN NAAAFETPWL SWMGPWTLTT GISWMNDNRA VEDTLLWNFR
GTLKPVQQLE IGASWTVQMC GEGQDCGLGT FWDTISGGGE CADGSLDCDS AQNSRLGNQM
AGWDIRYADT WFNVPVGLYL ERTCEDSSGP MPWDLADCAK LAGVDTRFGF KDHQYKLFLE
YTDTLVACGS DDNVFNCFYE HTTYLSGSRY YRRSLGSTYD SDAETWVLGL IGQFGDSKGI
NAYLRYAQLN KDGKNHSSEW TPQPEKEDLL MLEVSYRQPM FKGMVTLGGT VSRSEFDTKT
DNDATLYGSY EYRF
|
|---|
| |