| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_0092 |
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| Symbol | engB |
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| ID | 4602349 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | + |
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| Start bp | 103103 |
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| End bp | 103756 |
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| Gene Length | 654 bp |
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| Protein Length | 217 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 639779404 |
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| Product | ribosome biogenesis GTP-binding protein YsxC |
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| Protein accession | YP_925974 |
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| Protein GI | 119773234 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG0218] Predicted GTPase |
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| TIGRFAM ID | [TIGR00231] small GTP-binding protein domain
[TIGR03598] ribosome biogenesis GTP-binding protein YsxC/EngB |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.0000000691838 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 6 |
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| Fosmid unclonability p-value | 0.100278 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | GTGAATCAAA CCCGTATCGA TTTTCGCCAA GCCAAATTTT TGATCAGTGC ACCGGATATT
GCCCATCTGG ACAAGCATCT GCCGGGTGAT GTTGGCGTAG AAATCGCCTT TGCTGGCCGT
TCCAACGCCG GAAAGTCCAG TGCGCTCAAT GCTCTGACAG AACAAAAAAG TCTGGCCCGC
ACCAGTAAAA CCCCAGGTCG TACCCAGCTT ATTAACGTAT TTGAGCTTGA TGCGCAGCGT
CGCCTGGTGG ACTTACCCGG TTATGGTTTT GCCAAGGTAC CCCTTGAGAT GAAGCATAAG
TGGCAAAATG CCTTGGGTGA GTACCTGCAA AAAAGGGCCT GCCTGAGTGG GGTTGTGGTG
TTGATGGACA TTCGTCACCC ACTGAAAGAT CTCGACCGGC AAATGATTGA GTGGTCTGTT
GCCAGCGAAA TTCCGGTACT GGCACTGCTC ACCAAGGCCG ACAAGCTGGG CCAGAGTGAG
AAGATGAAAA CCGTCAATGC TGTGCGCAAA GAGCTGGCTG AGTTTGGCGA TTGGGTGTCT
GTAGAGCCTT TCTCTGCTTT GAAGGGTACA GGTAAGCCCA AGGTACTGGC GATTTTGGAC
GCCTGGTGTC ATCCGGATTG GTTGGTGGAA GAATTGGAGC AAGCCGAAGA TTGA
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| Protein sequence | MNQTRIDFRQ AKFLISAPDI AHLDKHLPGD VGVEIAFAGR SNAGKSSALN ALTEQKSLAR
TSKTPGRTQL INVFELDAQR RLVDLPGYGF AKVPLEMKHK WQNALGEYLQ KRACLSGVVV
LMDIRHPLKD LDRQMIEWSV ASEIPVLALL TKADKLGQSE KMKTVNAVRK ELAEFGDWVS
VEPFSALKGT GKPKVLAILD AWCHPDWLVE ELEQAED
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