Gene Sama_0087 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSama_0087 
Symbol 
ID4602344 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella amazonensis SB2B 
KingdomBacteria 
Replicon accessionNC_008700 
Strand
Start bp98474 
End bp99745 
Gene Length1272 bp 
Protein Length423 aa 
Translation table11 
GC content56% 
IMG OID639779399 
Productamidohydrolase 
Protein accessionYP_925969 
Protein GI119773229 
COG category[Q] Secondary metabolites biosynthesis, transport and catabolism 
COG ID[COG1228] Imidazolonepropionase and related amidohydrolases 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0161193 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.19517 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAAAAGA CGCTCTTGTC TGTCACTTTA TGGGCTTTAT GTGTGAATGC TCACGCGCTG 
ACCCTCATCC ATGCGGGAAG TATCATCGAT GGTGAGGCTG CCAAACCGGT GCGGGAGGCA
ACACTGGTAC TGGACGGAAA TCGCATTCAG GGCATCGAAA AAGGCTACCG AGCCCCGGCA
GAAGGCGACA CAGTGATAGA TTGGCGCGAT GGCACCCTGA TGCCGGGCTT TATCGATATG
CATACCCACC TGACGTTTCA GGGCAGTAAA GACTCTTACC TTGAGCCCTA TACTCTGAAT
CCTGCCGATG TTGCCCTGCG TGGTGTGATG TATGGCAAAC GCACCCTGAA TGCCGGTTTT
ACCACGGTGC GCGATCTGGG GGATGCCGGG CTCGGCTCTA TTGCCCTTCG AAATGCAATC
AACAAAGGCT GGGTACAGGG CCCCCGGATA TTTACCGCCG GTACCAGCAT TGGCACCACG
GGCGGACATG CCGACAAGAC AAACGGTCGC AACCAGGAGC TGGTGGGCGA CCCCGGGCCA
AAGGAAGGGG TAATCAACGG TCCTGCCGAT GCCTACAAGG CGGTGCGCCA GCGCTATAAA
GACGGATCCG ACCTGATAAA GATTACCGCG ACTGGTGGTG TGCTCTCCGT GGCCAAGAGC
GGCGAAAATC CGCAATTTAC TGATGAAGAG CTTAAGGCCA TAGTGGCTGC AGCCAAGGAT
TACGGCTTTA AAGTGGCAGT GCATGCCCAT GGCAAAGAGG GTATGAAAAG GGCAATTCTG
GCCGGGGTGA ACACCATAGA GCACGGCACC TACATGGATG AGGAATTGTT CCCCCTGATG
AAAAAACACA ATGTGGCGCT GGTGCCCACC CTGCTGGCGG GAGAGTTTGT GGCCGACAAA
GCAAAAATTG ACGGCTATTT CCCGGAAGTT GTCAGGCCCA AGGCGGCGGC AATCGGCCCC
AAGATCCAGG GGACCTTTGC CAAGGCATAC AAGGCCGGAG TGACCATCGC CTTCGGTACA
GATGCCGGCG TGTATGAGCA TGGACGTAAC GGACGCGAGT TTACCCTGAT GGTGGATGCC
GGTATGCCAC CCATGGCCGC CATCCAGTCG GCCACCTCCG TTGCCGCCAG AGTGCTTGGT
CAGTCAGACC TGGGTACATT AAAAGCGGGC ATGTTAGCCG ATGTGACCGG AGTAAAAGGA
AATCCACTGG AGAATATCGC CTTGTTGGAG GCCGTAGACC TGGTGATTAA AGACGGTACG
CGGGTGAAGT AA
 
Protein sequence
MKKTLLSVTL WALCVNAHAL TLIHAGSIID GEAAKPVREA TLVLDGNRIQ GIEKGYRAPA 
EGDTVIDWRD GTLMPGFIDM HTHLTFQGSK DSYLEPYTLN PADVALRGVM YGKRTLNAGF
TTVRDLGDAG LGSIALRNAI NKGWVQGPRI FTAGTSIGTT GGHADKTNGR NQELVGDPGP
KEGVINGPAD AYKAVRQRYK DGSDLIKITA TGGVLSVAKS GENPQFTDEE LKAIVAAAKD
YGFKVAVHAH GKEGMKRAIL AGVNTIEHGT YMDEELFPLM KKHNVALVPT LLAGEFVADK
AKIDGYFPEV VRPKAAAIGP KIQGTFAKAY KAGVTIAFGT DAGVYEHGRN GREFTLMVDA
GMPPMAAIQS ATSVAARVLG QSDLGTLKAG MLADVTGVKG NPLENIALLE AVDLVIKDGT
RVK