| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_0025 |
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| Symbol | glyS |
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| ID | 4602282 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | - |
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| Start bp | 23457 |
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| End bp | 25526 |
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| Gene Length | 2070 bp |
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| Protein Length | 689 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 639779334 |
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| Product | glycyl-tRNA synthetase subunit beta |
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| Protein accession | YP_925907 |
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| Protein GI | 119773167 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0751] Glycyl-tRNA synthetase, beta subunit |
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| TIGRFAM ID | [TIGR00211] glycyl-tRNA synthetase, tetrameric type, beta subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 4 |
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| Fosmid unclonability p-value | 0.0144037 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAATTTG AAAACCTGCT CATCGAAATT GGTACCGAAG AGCTGCCACC CAAAGCACTG
CGCACCCTGG CCGAATCCTT TCAAGCCAAC TTCAGCGAGG AGCTGACCAA GGCTGAACTG
CCATTTGAAT CTATCGAATG GTATGCCGCC CCACGTCGCC TGGCCCTGTA CGTTAAGGGG
CTGGCAACCG CGCAGGAAGA CAAGGTAGTA GAAAAACGCG GGCCTGCGGT GCAGTCCGCC
TTCGATGCCG ACGGTAATCC AACCAAGGCC GCCGAAGGCT GGGCCCGTGG TAACGGCATT
ACCGTGGCAG AGGCCGAGCG TCTGGCCACT GACAAAGGCG AATGGCTGGT TTATCGTGCC
AATGTCGCCG GTGAGCCTAC ATCTGTTTTG GTGCCTGCGA TGACCCAGCG CGCACTGGAT
AAGCTGCCTA TCCCCAAGCC GATGCGCTGG GGCAGCAACA GCACTCAGTT TATCCGCCCT
GTGCACACAG TTACCCTGCT GCTTGGCAGC GAACTGATTG CCGGTGAAGT GCTGGGTATT
CAATCTGACC GCACTATTCG TGGCCACCGC TTTATGGGCG AGTCCAGCTT CAGCCTGGAT
CATGCCGACA ACTACCTGGC CGCCCTGAAA GAGCGCGGTA AAGTTATCGC CGACTATCAG
GCCCGTAAAG CCCTCATCAA GGCCGACGCC GAGAAAGCCG CTGCTGTGAT TGGTGGCAAC
GCCGACATCG AAGAGAGCCT GCTGGAAGAA GTGGCCTCAC TGGTTGAATG GCCAGTGGTA
CTCACCGCCC ACTTTGAAGA GAAGTTCCTG GCCGTGCCTG CCGAGGCGCT GGTGTACACC
ATGAAAGGTG ACCAGAAGTA CTTCCCGGTA TTCTCAAACG ACGGCAAGCT GCTGCCAAAC
TTCATCTTTG TGGCCAACAT CGAGTCCAAA GATCCGGCGC AAATCATTGC CGGTAACGAG
AAGGTGGTTC GTCCACGTCT GGCCGACGCC GAATTCTTCT TCAACACCGA CAAAAAACAC
ACCCTTGCAA GCCGTCTGGC GAGCCTGGAA ACCGTAGTAT TCCAGAAGCA ACTGGGCACC
CTGAAAGACC GCGCCGAGCG CATCTCTGCC CTCGCTGGCT TTATCGCGGG TCAGATTGGC
GCCAGCAGCG AAGACGCCGC CCGTGCAGGT TTGCTGTCAA AGTGCGACCT GATGACCAAC
ATGGTGATGG AATTTACCGA TACTCAGGGC ACCATGGGCA TGCACTATGC TCGCCTCGAC
GGTGAAGCCG AAGCCGTTGC TGTGGCACTG GAAGAGCAAT ACAAGCCCAA GTTCAGTGGC
GACAGCGTGC CAAGCGCCGG TGTTTCCTGC GCCGTGGCTC TGGCCGAGAA ACTCGACACC
CTGTCTGGCA TCTTCGGTAT CGGTCAGGCG CCGAAAGGCG CTGCTGACCC GTTCGCGCTG
CGCCGTGCTG CCATTGGTGT GCTGCGTATC ATAGTTGAGA ACAAGCTACC GCTGGATCTG
GTTGACCTGA TTGCCAAAGC CGTTGAACTG CACGGTAGCA ACCTCAGCAA TGCCTTGGCT
GCCGATGAAG TGCTTGAGTT CCTGATGGGC CGCTTCCGCG CCTGGTATCA GGACAAAGGC
ATCAGCACCG ACGTTATTCT TGCCGTATTG GCCCGTCGTC CAACCCGACC TGCGGATTTT
GATGACCGAA TTCTGGCGGT AAGCCACTTC CGCACCCTGG AGCAGGCCGC AGCACTTGCC
GCCGCCAACA AGCGTGTATC CAACATCCTG GCCAAGGTGG AAGGTGAACT GCCAAGCAGC
ATCAATGATG CGCTGCTGAG TGAAGCCGCT GAAAAAGCAC TGGCAGCCAA GCTTGCCGAA
GTAACGCCGG TCATTGCCCC ACTGTTCGCT GCCGGTAACT ACCAACAGGC TCTGACTGAA
CTGGCTGCCC TGCGCGAGAG CGTGGATCAG TTCTTCGAAG ACGTGATGGT CATGGCCGAC
GACCAGGCGC TTCGCAACAA CCGTCTGGCA CTGCTTGGCA ACCTGCGCGA CCAGTTCCTG
CACGTAGCCG ACATTTCTCT GCTTCAATAA
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| Protein sequence | MKFENLLIEI GTEELPPKAL RTLAESFQAN FSEELTKAEL PFESIEWYAA PRRLALYVKG
LATAQEDKVV EKRGPAVQSA FDADGNPTKA AEGWARGNGI TVAEAERLAT DKGEWLVYRA
NVAGEPTSVL VPAMTQRALD KLPIPKPMRW GSNSTQFIRP VHTVTLLLGS ELIAGEVLGI
QSDRTIRGHR FMGESSFSLD HADNYLAALK ERGKVIADYQ ARKALIKADA EKAAAVIGGN
ADIEESLLEE VASLVEWPVV LTAHFEEKFL AVPAEALVYT MKGDQKYFPV FSNDGKLLPN
FIFVANIESK DPAQIIAGNE KVVRPRLADA EFFFNTDKKH TLASRLASLE TVVFQKQLGT
LKDRAERISA LAGFIAGQIG ASSEDAARAG LLSKCDLMTN MVMEFTDTQG TMGMHYARLD
GEAEAVAVAL EEQYKPKFSG DSVPSAGVSC AVALAEKLDT LSGIFGIGQA PKGAADPFAL
RRAAIGVLRI IVENKLPLDL VDLIAKAVEL HGSNLSNALA ADEVLEFLMG RFRAWYQDKG
ISTDVILAVL ARRPTRPADF DDRILAVSHF RTLEQAAALA AANKRVSNIL AKVEGELPSS
INDALLSEAA EKALAAKLAE VTPVIAPLFA AGNYQQALTE LAALRESVDQ FFEDVMVMAD
DQALRNNRLA LLGNLRDQFL HVADISLLQ
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