| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sala_3169 |
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| Symbol | |
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| ID | 4082505 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sphingopyxis alaskensis RB2256 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008048 |
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| Strand | - |
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| Start bp | 3321409 |
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| End bp | 3323223 |
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| Gene Length | 1815 bp |
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| Protein Length | 604 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 638011554 |
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| Product | tetratricopeptide TPR_2 |
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| Protein accession | YP_618205 |
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| Protein GI | 103488644 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG4783] Putative Zn-dependent protease, contains TPR repeats |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.120053 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.668049 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TTGGCGACGG TCACCCATGA CGAGGCGCTC GCCCACGCCC GCCGGCTGCT GAACGGCCAG
CCGGGCGCCG CGCTCGAACA GGCGCGCGCG ATCCTCGCGG CGGTTCCGGC ATCGGCCGCG
GCGCACCGGA TCGCGGCGGA GGCGCTGCGC CGGCTCGGCC GCGACGGCGA AGCCGCCGAC
GCCGCGCTCG CGGCGGTCGG CGCGGCGGTG CATGACGAGG CGATGATCGC CGCGGCGCTC
GCGCTCGCCG AAAACCGCCT GCCCGATGCC GAGGCGGCGC TGCGCGCGCG GCTGAAAGAA
GACCCGACTG ACGTCGCCGC GATCCGGATG CTCGCCGAGG TTGCGGGACG GATCGGCCGT
TATGGCGACG CCGAAAAGCT GCTGACGCGC GCGCTGGAGC TGGCTCCCGG TTTCGGCGCG
GCGCGCGCCA ATCTGGCCAC CGTGCTCTAC AAGCAGAACC GCTATGCCGA GGCGGTCGAA
ACGCTCGATG CGGTGCTGAC CGACGACCCC GACAATCCCG CGCACGCGAA CCTCAAGGCC
GCCGCGCTGG GCCGGATCGG TGGCTATGAC GAAGCGATCG CGCTCTATGC CGAGCTGGTC
GAGCGCTTCC CCGGCCACGC CAGGCTGTGG ATGAGCTATG GCCATATGCT CAAGACCGTC
GGACGGCAGG AGGACAGCAT CGCCGCCTAT CGCCGCGGCC TCGATGCCGA GCCGGGGCTG
GGCGAAATCT GGTGGAGCCT CGCCAACCTC AAGACGATCC GCTTTGACGA AGCCGACCGG
CAGGCGATGG AAGCCGCGCT CGCCGCCGCC GAACCGGCGG GGGCGGAGCG CGACGACGAC
CGGCTGCACC TGCATTTCGC GCTGGGCAAG GCGTATGACG ATGCGGGCGC GCCCGACGCG
GCCTTTCGCC ATTATGCCGC CGGCAATGCG ATCCGCGCGG GTCAGCTCGG CTATGACGCC
GCCGAGACGA GCGCGATCGT CGATGCCGCG ATCGCGACCT GCACCGCCGG TTTCTTTGCC
GACCGCGCCG GACAGGGCGA CCCCAGCGGC GATCCCGTCT TCATTCTGGG GATGCCGCGC
GCGGGATCGA CCTTGATCGA ACAGATTCTC GCAAGCCATT CGGCGATCGA GGGGACGATG
GAGCTGCCCG ATATCCCCGC GCTCGCGCTC GGCCTGGGCC GCGAGGCAAA GGGCGAAGGT
CGCCACTGGG TCGCGGCGCT CGCCGAGGCC TGCCCCGACA AGCTCGCCGA TATGGGCGCC
GCCTTCCTGC GCCGCACCGC GGTGCAGCGC AAGACCGGCA AGCCGCTCTA TATCGACAAG
CTGCCCAACA ACTGGCTCTA TGCGCCGCTG ATCCGGCTGA TCCTGCCCAA CGCCAAGATC
ATCGACGCGC GGCGTCACCC GCTCGATTGC TGCTGGTCGA ACTTTCGCCA GCATTTCGCC
AAGGGACAGG CGTTCAGCTA TCGTCTGTCC GACATGGGCG CCTATTATCG CGATTATGTG
CGGCTGATGG CACATCTCGA CGCGGTGCAG CCGGGGCGCG TCCACCGCGT CATCCACGAA
GCGCTATTGA GCGATCCCGA GACCGAAGTG CGCGCGATGC TCGCCTTCCT CGGCCAGCCC
TTCGAGGAGG GCTGCATGGC GTTCCACACC AATGCGCGCG CGGTGCGCAC GGCATCGAGC
GAACAGGTGC GCCGCCCGAT CAACCGCGAC GGCGTCGACC AATGGCGGCC CTATGCCGAG
TGGCTGGGAC CGCTCGAGGA GGCGCTGGGA CCGGTGCTCG ACGCCTATCC GGAGGTTCCC
GCGGGGTTGA TATAG
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| Protein sequence | MATVTHDEAL AHARRLLNGQ PGAALEQARA ILAAVPASAA AHRIAAEALR RLGRDGEAAD
AALAAVGAAV HDEAMIAAAL ALAENRLPDA EAALRARLKE DPTDVAAIRM LAEVAGRIGR
YGDAEKLLTR ALELAPGFGA ARANLATVLY KQNRYAEAVE TLDAVLTDDP DNPAHANLKA
AALGRIGGYD EAIALYAELV ERFPGHARLW MSYGHMLKTV GRQEDSIAAY RRGLDAEPGL
GEIWWSLANL KTIRFDEADR QAMEAALAAA EPAGAERDDD RLHLHFALGK AYDDAGAPDA
AFRHYAAGNA IRAGQLGYDA AETSAIVDAA IATCTAGFFA DRAGQGDPSG DPVFILGMPR
AGSTLIEQIL ASHSAIEGTM ELPDIPALAL GLGREAKGEG RHWVAALAEA CPDKLADMGA
AFLRRTAVQR KTGKPLYIDK LPNNWLYAPL IRLILPNAKI IDARRHPLDC CWSNFRQHFA
KGQAFSYRLS DMGAYYRDYV RLMAHLDAVQ PGRVHRVIHE ALLSDPETEV RAMLAFLGQP
FEEGCMAFHT NARAVRTASS EQVRRPINRD GVDQWRPYAE WLGPLEEALG PVLDAYPEVP
AGLI
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