Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sala_3161 |
Symbol | |
ID | 4082497 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sphingopyxis alaskensis RB2256 |
Kingdom | Bacteria |
Replicon accession | NC_008048 |
Strand | + |
Start bp | 3309753 |
End bp | 3311939 |
Gene Length | 2187 bp |
Protein Length | 728 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 638011546 |
Product | peptidyl-dipeptidase Dcp |
Protein accession | YP_618197 |
Protein GI | 103488636 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0339] Zn-dependent oligopeptidases |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 12 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCCGCAGA GCGCGCCCCG CCTTGCCCGC AAGCTGTCGA TCATGCTTGC ATCCACCGCG ATGATCATGG GTTATGGCCC GATGAGCACC GCCATCGCCG CCGAACCCGC CGCCGCCAAA ACCGTCCCCG CAGGACAGAA CCCGCTGCTG CAACCCTGGA CCGGCCCCTA TCAGGGGGTG CCGCCGTGGG ACAAGCTCGA CCCCGAACTT TTCCCCGACG CCTTTCAGAA GGCGATGGCC GAGGTGAAGG CCGAAGTGCA GGCGGTGATC GACAACCCCG CCGAACCGAC GTTCGAAAAC ACCCACGTCC CGATGATGCT CGCGGGCGAG ACGATGGAGC GCGTCTTTGC GATGTGGGGC GTGCAGACGT CGAACAAATC GAACGATCGC GTCGAGGAAA TCGACGCCGA ATGGAGCCCG AGGCTCACCA CCTTCTACAC CGAGCTGTTC CTCGATCCCA AACTCTTCGC GCGCTACAAG GCGGTGTACG ACAAGCGCCA CACGAGCGGG CTCGACGCGC AGCAGATCCG CATCGTCGAG CGCAGCCATG ACGAAATGGT GCGCGACGGC GCGAACCTGT CCCCGGCGGA CAAGGAAAAG CTGGTCGCGA TGAACGCGAA GCTCGAAGGC CTCTTCTCGG CTTTCTCCTC AAAGCTGCTC GGCGATGAAA AGCTCTACAC CTTCGTCACC GACAAGGCCG AGCTCGACGG GCTCGACCCG GCTTTCGTCG CGTCGCTTGC CGCCGCGGCG GAGGCCAACG GCCATGCCGG TCACTGGGCG ATCAAGAATA CGCGCTCGTC GGCGCAACCG GTGCTGCAGA ATGCGACCAA CCGCAAATTG CGCGAAAAGG TCTGGCGCGC CTTCGTCGGC CGCGGCGACA ATGGTGACGC CAACGACACC AATGCGACGA TCGCCGAAAT CCTGAAGCTG CGCCAGCAGC GCGCCGAACT GCTCGGTTTC CCGACCCACG CGCATTACCG CATGGCCGAC ACGATGGCGA AGACGCCCGA CAATGCGATG GGTCTGATGA TGAAGGTGTG GCCCGCCGCC GTCGCGCGCG TGAAGGAAGA GGTCGCCGAC ATGCAGGCGA TCGCCGACGC CGAAGCCAGG GCGGGCAAGG GGCCGAAGAT CACCATCGAG CCATGGGACT ATCGCTATTA TGCCGAAAAG GTCCGCAAGG CGAAATATGA CCTCGATGAA AGCGAGGTGA AGCCCTATCT TCAGCTCGAC AAGCTGGTCG ACGGCATGTT CTGGGCCGCG GGTCGGCTCT ATGACCTCGG CTTCCGCGAG AATACGGGGC AGATTCCGGT TTTCGATCCC AAGGTGCGGA CCTTCGAGGT TTATAACCTC AAGACGAACG AGAATGTCGG CGTCTTCTAC CTCGACAATT TCGCGCGCGA CGGAAAGCGG TCGGGCGCGT GGATGACGAC CTATCGCAGC CAGCAGTCGC TCGGCGGCGA GCGCAACGTC CTTGCCTCGA ACAACAATAA TTTCACCGAA GGCGCACAGG GCGAACCGAC GCTCATCAGC ATCGACGACG CCTCGACCTT GTTCCACGAG TTCGGCCACG GCATCCATTA TCTGCTCCAG CAGGTCAAAT ATCCGGCGCT CGCCGGGGTG CCGCGCGATT TCGTCGAATA TCCCAGCCAG GTGAACGAAA ACTGGCTGAT GACCCCCGAA GTGCTGTCGA AATATGCGAC GCACTACCGG ACGGGCGAGC CGATGCCGCA GGTGCTGGTC GACAAGATCC TCGCGAGCCA GAAGTTCAAC CAGGGGTTCG AGACGGTCGA ATATCTGGCG AGCGCGATCG TCGACATGAA GCTGCACGAC CGCAAGACCC CGCCGACCGA CGTCGACAGG TTCGAACGCG AGACGCTGGC CGAAATCGGA ATGCCAAAGG AAATCGTCAT GCGGCACCGC CTGCCGCAGT TCGGCCACCT GTTCAGCTCG GACGCCTATT CGGCGGGCTA TTACTCCTAC CTCTGGTCCG AAACGATGGA CGCCGACACC TGGGCGGCTT TCACCGAAGC CGGCGGCCCG TGGGACCGCA GCGTTGCCGA CAGGTTCCGC ACCATTTTGC TCATGACCGG CAACGAGACC GACCGCGCCG AGGCCTATCG CGCCTTCCGC GGCCGCGACC CCGACGTCAA GGCGCTGCTC GAAAAGCGCG GTTTCCCGAC CGAATAA
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Protein sequence | MPQSAPRLAR KLSIMLASTA MIMGYGPMST AIAAEPAAAK TVPAGQNPLL QPWTGPYQGV PPWDKLDPEL FPDAFQKAMA EVKAEVQAVI DNPAEPTFEN THVPMMLAGE TMERVFAMWG VQTSNKSNDR VEEIDAEWSP RLTTFYTELF LDPKLFARYK AVYDKRHTSG LDAQQIRIVE RSHDEMVRDG ANLSPADKEK LVAMNAKLEG LFSAFSSKLL GDEKLYTFVT DKAELDGLDP AFVASLAAAA EANGHAGHWA IKNTRSSAQP VLQNATNRKL REKVWRAFVG RGDNGDANDT NATIAEILKL RQQRAELLGF PTHAHYRMAD TMAKTPDNAM GLMMKVWPAA VARVKEEVAD MQAIADAEAR AGKGPKITIE PWDYRYYAEK VRKAKYDLDE SEVKPYLQLD KLVDGMFWAA GRLYDLGFRE NTGQIPVFDP KVRTFEVYNL KTNENVGVFY LDNFARDGKR SGAWMTTYRS QQSLGGERNV LASNNNNFTE GAQGEPTLIS IDDASTLFHE FGHGIHYLLQ QVKYPALAGV PRDFVEYPSQ VNENWLMTPE VLSKYATHYR TGEPMPQVLV DKILASQKFN QGFETVEYLA SAIVDMKLHD RKTPPTDVDR FERETLAEIG MPKEIVMRHR LPQFGHLFSS DAYSAGYYSY LWSETMDADT WAAFTEAGGP WDRSVADRFR TILLMTGNET DRAEAYRAFR GRDPDVKALL EKRGFPTE
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