| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sala_3127 |
|---|
| Symbol | |
|---|
| ID | 4082383 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sphingopyxis alaskensis RB2256 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008048 |
|---|
| Strand | - |
|---|
| Start bp | 3280090 |
|---|
| End bp | 3281868 |
|---|
| Gene Length | 1779 bp |
|---|
| Protein Length | 592 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 638011512 |
|---|
| Product | heparinase II/III-like protein |
|---|
| Protein accession | YP_618163 |
|---|
| Protein GI | 103488602 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG5360] Uncharacterized protein conserved in bacteria |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGAGGGGA GACCGCTGAC CACCGCCCCC GCCGACCCGC CGCTCGATCC CGGTTACGAC
GCCGCGCCGA TCGACGACAC GATCGAACCC GGCAAACGCC TGATCCGCCT GCCCGCCGAC
AAGGGGCTGT CGCTCGGCGA TCGCGTCGCC AATGCGATCA CCCGCCTGAC CTGGCGCACC
CCGCTCCACG CGCTGCGGCT CAAAGGGCGC TTTCCGCTGA AGCTGCTCGG CGTACCCGCC
GACCCGGTGC CGGGCGATCC GCGTGCGGGC ACCGCGATCC GTGCCGGCCA TTTTCTGCAT
CGCGGGCTGA AACTGCCGCT CGGCGATCTT GATTTCGCGT CGCTGACCGT CGCGCCGGCC
TTTGCCGATT ATCTGCACAG CTTTGCCTGG CTGCGCGACC TCGCCGCCAC CGGCACCCGC
GCCGATGGCG CGCCGATCGC CGAAGCCGTG GTGCGTCACT GGCTCGGCAC GCATGGCGAG
ACGGTGAGCG AACCCGCGTG GCGCGCCGAC AATACCGGCT GGCGTATCCT CTTCTGGGCC
GCTCACGCGC CGCTCATCCT GTCGTCGAGC GACCTTGTCT ATCGCTCGGC GGTGCTCAAC
CACCTCGCGC GCGCGGCGCG GCACCTCGAC CGCGTCGCCG ACAAGACGCG GCCGGGCACG
GGACAAATGG TCGCGTGGGT CGGCATCGTC GCCGCGTCGC TCCTCATGCC CGGCGGCGAG
CCGCGGCAGG TGTTCGGCGA AGCGGGGCTA CGCAAGGTGC TGGAAACCAG CTTTTATGCC
GACGGCGGCA ATATCTCGCG CTCGCCGCAG GCGCAACTCG ACGCGATCAT GGCGCTGTCG
ATGCTCGCGC GCACCTATGA CATGCGCCGC ATGGAGGTGC CACCCTTTGT GCAGGAAGTG
CTCGCGCGGG CCGTCCCCGC GCTGCTCGGG CTGCTCCACG CCGATGGCGG CATGGGCTGC
TGGCAGGGCA GCGGTGCGAC CTCGGCGGCG CATGTGCAGG CGATCGTCGC GGCAAGCGGC
GTGCGCACCC GGCCGCTGAA ACAGGCGCGC GACTGGGGCT ATCAGCGGCT TGTCGCGAAC
AAGGCGGTGC TGCTCGCCGA CGCCGCGCCT CCCCCCATTG CCCGGGTGAC CGAGGCGGGC
TGCGCTTCGA CCCTCGCCTT CGAACTCAGC GATGGCGACG AACGGATCGT CGTCAACTGC
GGCGGTGCGG CGCTCACCGG CGCGACGATC CCCGCCGACC TTGCGCGCGG GCTGCGGACA
ACCGCGGCGC ATTCGACGCT GACGCTGGCC GACAGCAATT CGACCGCAAT CCTGCCCGGC
GGCGCGCTTG GCAAGGGCGT CACCGAGGTC GAGCTTGATC GCCGCGAAAC ACCGCAGGGC
AGCCGGCTCG AGATGAGCCA CGACGGCTAT GCACGCCGCC ACGGGCTGAT CCACCGCCGC
CTGCTGATCC TCTCACCCAA CGGGCGCGAA CTGCGCGGCG AGGACATGCT GCTGCCCGCC
CCGCGCACGC GGCGCAAGGG CGACAAGGCC TTCACGATCC GCTTTCACCT CGGCCGCAAC
ATTTCGGCCA GCCTGACCGC CGACGGGCTG GGTGCGCTGC TGCGCCTCGG CGGCGGGCCG
CTGTGGCAGT TCCGCACCTC CGAAGGCGAG CTGGCCATCG AGGAAAGCCT GTGGGTCGAT
GGCGATGGCC GCCCCTACCC GACCGAACAG CTTGTCGTCA CGGGCACCGC CCCCGCGGGC
GGGGTGAGCG TGGGGTGGAT ATTCAAGCAT ATCGGGTAG
|
|---|
| Protein sequence | MEGRPLTTAP ADPPLDPGYD AAPIDDTIEP GKRLIRLPAD KGLSLGDRVA NAITRLTWRT
PLHALRLKGR FPLKLLGVPA DPVPGDPRAG TAIRAGHFLH RGLKLPLGDL DFASLTVAPA
FADYLHSFAW LRDLAATGTR ADGAPIAEAV VRHWLGTHGE TVSEPAWRAD NTGWRILFWA
AHAPLILSSS DLVYRSAVLN HLARAARHLD RVADKTRPGT GQMVAWVGIV AASLLMPGGE
PRQVFGEAGL RKVLETSFYA DGGNISRSPQ AQLDAIMALS MLARTYDMRR MEVPPFVQEV
LARAVPALLG LLHADGGMGC WQGSGATSAA HVQAIVAASG VRTRPLKQAR DWGYQRLVAN
KAVLLADAAP PPIARVTEAG CASTLAFELS DGDERIVVNC GGAALTGATI PADLARGLRT
TAAHSTLTLA DSNSTAILPG GALGKGVTEV ELDRRETPQG SRLEMSHDGY ARRHGLIHRR
LLILSPNGRE LRGEDMLLPA PRTRRKGDKA FTIRFHLGRN ISASLTADGL GALLRLGGGP
LWQFRTSEGE LAIEESLWVD GDGRPYPTEQ LVVTGTAPAG GVSVGWIFKH IG
|
|---|
| |