Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sala_3070 |
Symbol | |
ID | 4083078 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sphingopyxis alaskensis RB2256 |
Kingdom | Bacteria |
Replicon accession | NC_008048 |
Strand | - |
Start bp | 3220396 |
End bp | 3221199 |
Gene Length | 804 bp |
Protein Length | 267 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 638011456 |
Product | short-chain dehydrogenase/reductase SDR |
Protein accession | YP_618107 |
Protein GI | 103488546 |
COG category | [I] Lipid transport and metabolism [Q] Secondary metabolites biosynthesis, transport and catabolism [R] General function prediction only |
COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 19 |
Plasmid unclonability p-value | 0.49838 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 18 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGGCGCGT TGGACGGCAA GGTTGCGATC ATCACGGGCG CGGGCAGCGG CATCGGCCGC GCGAGCGCGC TGCGGTTTGC TGCCGAAGGG GCGAAGCTCG TCATCGGCGA CAAGAGCGCG GCGGTGCACG AAACCGCGCA AATGGTGAAG GATGCGGGGG GCGAGGCGAT CGCGATGGAA ATCGACGCGG GCGTCGAAGC CGATGTCGCC GCGATGGTCG CGACCGCAAA GGAAAGCTTC GGCGGGCTCG ACGTCGCCTT CGCCAACGCC GGGATCATCG GCGACATGGG CGGCATTTTC GATTTCGACC CCGCGGCCTG GGCCGAAACT TTGCGCGTCA ACCTGATCGG CCCCGCGCTG ATGGTGAAAC ATGCCGGCAA GGCGATGGTC GATCAGGGGC GCGGCGGCGC GATCGTGCTG ACCGCGAGCG TCGCGGGGAT CAATTCGGGC GCGGGTCCGG GCGCCTATTC GGCGTCGAAG GCGGGGGTCA TCAACCTCGC CAAGGTCGCC GCGCAGCAAC TGACCGGCAG CGGCGTGCGC GTCAACGCCA TCTGCCCCGG CCTGACCGAA ACGGGAATGA CCAAGCCGAC CTTCGACTAT GCGCGCGCCA AGGAGGTGAC CCACAAGCTC GGCCAGCTCA ATCCGCTGAA ACGCGCGGCA CAACCCGAGG AGCTCGCCAA TGTCGCGCTG TTCCTCGCGA GCGATCAGGC GAGCTATGTC AACGGACAGG CGATTGCGGT TGACGGCGGA CTGACCAGCT CGCATCCGGT GACGCGCCAG TTGCTTGGCC AGACTTCGCA TTGA
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Protein sequence | MGALDGKVAI ITGAGSGIGR ASALRFAAEG AKLVIGDKSA AVHETAQMVK DAGGEAIAME IDAGVEADVA AMVATAKESF GGLDVAFANA GIIGDMGGIF DFDPAAWAET LRVNLIGPAL MVKHAGKAMV DQGRGGAIVL TASVAGINSG AGPGAYSASK AGVINLAKVA AQQLTGSGVR VNAICPGLTE TGMTKPTFDY ARAKEVTHKL GQLNPLKRAA QPEELANVAL FLASDQASYV NGQAIAVDGG LTSSHPVTRQ LLGQTSH
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