Gene Sala_3070 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSala_3070 
Symbol 
ID4083078 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSphingopyxis alaskensis RB2256 
KingdomBacteria 
Replicon accessionNC_008048 
Strand
Start bp3220396 
End bp3221199 
Gene Length804 bp 
Protein Length267 aa 
Translation table11 
GC content67% 
IMG OID638011456 
Productshort-chain dehydrogenase/reductase SDR 
Protein accessionYP_618107 
Protein GI103488546 
COG category[I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only 
COG ID[COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value0.49838 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones18 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGGCGCGT TGGACGGCAA GGTTGCGATC ATCACGGGCG CGGGCAGCGG CATCGGCCGC 
GCGAGCGCGC TGCGGTTTGC TGCCGAAGGG GCGAAGCTCG TCATCGGCGA CAAGAGCGCG
GCGGTGCACG AAACCGCGCA AATGGTGAAG GATGCGGGGG GCGAGGCGAT CGCGATGGAA
ATCGACGCGG GCGTCGAAGC CGATGTCGCC GCGATGGTCG CGACCGCAAA GGAAAGCTTC
GGCGGGCTCG ACGTCGCCTT CGCCAACGCC GGGATCATCG GCGACATGGG CGGCATTTTC
GATTTCGACC CCGCGGCCTG GGCCGAAACT TTGCGCGTCA ACCTGATCGG CCCCGCGCTG
ATGGTGAAAC ATGCCGGCAA GGCGATGGTC GATCAGGGGC GCGGCGGCGC GATCGTGCTG
ACCGCGAGCG TCGCGGGGAT CAATTCGGGC GCGGGTCCGG GCGCCTATTC GGCGTCGAAG
GCGGGGGTCA TCAACCTCGC CAAGGTCGCC GCGCAGCAAC TGACCGGCAG CGGCGTGCGC
GTCAACGCCA TCTGCCCCGG CCTGACCGAA ACGGGAATGA CCAAGCCGAC CTTCGACTAT
GCGCGCGCCA AGGAGGTGAC CCACAAGCTC GGCCAGCTCA ATCCGCTGAA ACGCGCGGCA
CAACCCGAGG AGCTCGCCAA TGTCGCGCTG TTCCTCGCGA GCGATCAGGC GAGCTATGTC
AACGGACAGG CGATTGCGGT TGACGGCGGA CTGACCAGCT CGCATCCGGT GACGCGCCAG
TTGCTTGGCC AGACTTCGCA TTGA
 
Protein sequence
MGALDGKVAI ITGAGSGIGR ASALRFAAEG AKLVIGDKSA AVHETAQMVK DAGGEAIAME 
IDAGVEADVA AMVATAKESF GGLDVAFANA GIIGDMGGIF DFDPAAWAET LRVNLIGPAL
MVKHAGKAMV DQGRGGAIVL TASVAGINSG AGPGAYSASK AGVINLAKVA AQQLTGSGVR
VNAICPGLTE TGMTKPTFDY ARAKEVTHKL GQLNPLKRAA QPEELANVAL FLASDQASYV
NGQAIAVDGG LTSSHPVTRQ LLGQTSH