Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sala_3035 |
Symbol | |
ID | 4083043 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sphingopyxis alaskensis RB2256 |
Kingdom | Bacteria |
Replicon accession | NC_008048 |
Strand | + |
Start bp | 3182005 |
End bp | 3182760 |
Gene Length | 756 bp |
Protein Length | 251 aa |
Translation table | 11 |
GC content | 68% |
IMG OID | 638011421 |
Product | 2-deoxy-D-gluconate 3-dehydrogenase |
Protein accession | YP_618072 |
Protein GI | 103488511 |
COG category | [I] Lipid transport and metabolism [Q] Secondary metabolites biosynthesis, transport and catabolism [R] General function prediction only |
COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
TIGRFAM ID | [TIGR01832] 2-deoxy-D-gluconate 3-dehydrogenase |
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Plasmid Coverage information |
Num covering plasmid clones | 30 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 12 |
Fosmid unclonability p-value | 0.810122 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACCGCAT CATTCGATCT CGTCGGGCGC GTCGCGCTCG TGACCGGCGC CAACACGGGC ATCGGGCAGG GGATCGCGTT CGCGCTTGCC GATGCGGGCG CCGATATCGC CGCCGCGGGC CGCTCGCCCG CCGACGAGAC CGTCGGCATG ATACGCGGGC TCGGTCGCAA GGCCGACAAT TTCGCCGCCG ACCTGTCGAG CGTCGCGGCG GTGCAGCCGC TCGTCGACAC CGTGCTCGCG GAGTTCGGCC GCATCGACAT CCTCGTCAAC AACGCCGGCA TCATCCGCCG GGCCGATGCG CTCGATTTCA CCGAGGAAGA TTGGGATGCG GTAATGGACA CCAATCTCAA GACGCTCTTC TTCCTCTGCC AGAGCGTCGG ACGGCACATG ATCGCGCGCG GGTCGGGCAA GATTATCAAC ATCGCCTCGA TGCTGACCTT TCAGGGGGGC GTCCGCGTGC CCAGCTACAC CGCGTCGAAA TCGGGGGTCG GCGGGCTCAC CAAGCTGCTC GCGAACGAAT GGGCGGCGAA GGGGGTCAAC GTCAACGCGA TCGCGCCCGG CTATATCGCG ACGAACAACA CCGCCGCGCT GCAGGCCGAT GAGACGCGCA GCCGGCAGAT CATGGAGCGC ATCCCGGCGG GCCGCTGGGG CGACCCCGCC GACATCGGCG GCGCGGCGGT ATTCCTGGCG TCGCGCGCGT CGGATTATGT GCAGGGGCAT ATCCTCGCCG TCGACGGCGG CTGGCTGGCG CGATAA
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Protein sequence | MTASFDLVGR VALVTGANTG IGQGIAFALA DAGADIAAAG RSPADETVGM IRGLGRKADN FAADLSSVAA VQPLVDTVLA EFGRIDILVN NAGIIRRADA LDFTEEDWDA VMDTNLKTLF FLCQSVGRHM IARGSGKIIN IASMLTFQGG VRVPSYTASK SGVGGLTKLL ANEWAAKGVN VNAIAPGYIA TNNTAALQAD ETRSRQIMER IPAGRWGDPA DIGGAAVFLA SRASDYVQGH ILAVDGGWLA R
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