| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sala_3032 |
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| Symbol | sdhA |
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| ID | 4083040 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sphingopyxis alaskensis RB2256 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008048 |
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| Strand | + |
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| Start bp | 3178042 |
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| End bp | 3179856 |
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| Gene Length | 1815 bp |
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| Protein Length | 604 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 638011418 |
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| Product | succinate dehydrogenase flavoprotein subunit |
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| Protein accession | YP_618069 |
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| Protein GI | 103488508 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG1053] Succinate dehydrogenase/fumarate reductase, flavoprotein subunit |
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| TIGRFAM ID | [TIGR01812] succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup
[TIGR01816] succinate dehydrogenase, flavoprotein subunit, E. coli/mitochondrial subgroup |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACCGAAG CCTACAAGAT CATCGATCAT ATCTATGACA CGGTCGTCGT CGGCGCGGGC
GGCTCGGGCC TGCGCGCGAC GATGGGCAGC GCCGAGGCGG GGCTGAAGAC CGCCTGCATC
ACCAAGGTGT TCCCGACGCG CAGCCACACC GTCGCGGCCC AGGGCGGCAT CGCCGCCAGC
CTCGGCAACA ATTCGCCCGA CCATTGGCAA TGGCACATGT ACGATACCGT CAAGGGCTCC
GACTGGCTCG GCGACCAGGA CGCGATCGAA TATATGGTGC GCGAGGCGCC CGCCGCAGTC
TACGAACTCG AACATGCGGG CGTTCCGTTC AGCCGCAACG CCGACGGCAC CATCTATCAG
CGCCCGTTCG GCGGCCATAT GCAGAATATG GGCGAAGGCC CGCCGGTGCA GCGCACCTGC
GCCGCGGCCG ACCGCACCGG CCATGCGATG CTTCACGCGC TCTACCAACA GAGCCTGAAA
TATGACGCGG ACTTTTTCAT CGAATATTTT GCGCTCGACC TGATCATGGA AAATGGCGCC
AATGGTCCCG AATGTCGCGG CGTCATCGCG CTGTGCATGG AGGATGGCAG CATCCACCGC
TTCCGATCGC AAGCCGTCGT GCTTGCGACG GGCGGCTATG GCCGCTGCTA TTTCACCGCG
ACGTCAGCGC ACACCTGCAC CGGCGACGGC GGCGGCATGG TGCTGCGCGC GGGCCTCCCG
CTTCAGGACA TGGAGTTCGT CCAGTTTCAC CCGACCGGCA TTTACGGCGC GGGCGTGCTG
ATTACCGAGG GCGCACGCGG CGAGGGCGGC TACCTCACCA ATTCGGAAGG CGAGCGGTTC
ATGGAACGCT ACGCCCCATC GGCGAAGGAT CTGGCGTCGC GCGACGTCGT CTCGCGCTCG
ATGGCGCTTG AAATCCGCGA AGGCCGCGGC GTCGGCCCGG ATGCCGACCA TATCTATCTG
CACCTCGACC ATATCGACCC CGCGGTGCTC GCCGAGCGGC TGCCGGGAAT CACCGAGAGC
GGCAAGATTT TCGCCGGCGT CGACCTCACG CGCCAGCCGC TGCCCGTCGT GCCGACGGTC
CATTACAATA TGGGCGGCAT CCCCTGTAAC TATCATGGCG AGGTCGTCAC GCTCGGCAAG
GATGGTCCCG ACACCGTCGT CCCCGGCCTG TTCGCGGTCG GCGAAGCGGC GTGCGTGTCG
GTCCACGGCG CGAACCGTCT CGGCTCGAAC AGCCTGATCG ACCTTGTCGT CTTCGGTCGC
GCCACGGGTC ATCGCCTCAA GGAACTGCTC ACCCCCGGCG CGGCGCAGCA GCCGCTGCCC
AAGGACAGCG CCGATCTGGC GCTCGCGCGG CTCGATCATT TCCGCCACGC CAGCGGCGGA
TCGCCCACTG CCGAAGTGCG CACCGAAATG CAGCGCGCGA TGTCGGCGCA CGCGGCGGTG
TTCCGCACCG ACGAGCTGAT GGCGGAGGGC AAGGAAAAGC TTGCGAAAAC CTATGCGCGG
ATGGCCGACA TCCACGTCAG CGACCGCAGC CTCATCTGGA ACACTGACCT TGTCGAAACG
CTGGAGCTCG ACAATCTGAT CGCGCAGGCG ACGGTGACGA TGCACTCGGC GTTCAACCGC
AAGGAAAGCC GCGGCGCCCA CGCGCACGAG GATTTCCCGA ACCGCGACGA TGCGAACTGG
ATGAAACACA GCGTCGCCTG GTTCGACGGC TGGGGCGGCA AGGGGGGCGA TGTCCGCCTC
GATTACCGCC CGGTCCACGA ATATACGCTG TCGGACGACG CCGAATATAT CAAGCCGAAG
GCACGTGTCT ATTGA
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| Protein sequence | MTEAYKIIDH IYDTVVVGAG GSGLRATMGS AEAGLKTACI TKVFPTRSHT VAAQGGIAAS
LGNNSPDHWQ WHMYDTVKGS DWLGDQDAIE YMVREAPAAV YELEHAGVPF SRNADGTIYQ
RPFGGHMQNM GEGPPVQRTC AAADRTGHAM LHALYQQSLK YDADFFIEYF ALDLIMENGA
NGPECRGVIA LCMEDGSIHR FRSQAVVLAT GGYGRCYFTA TSAHTCTGDG GGMVLRAGLP
LQDMEFVQFH PTGIYGAGVL ITEGARGEGG YLTNSEGERF MERYAPSAKD LASRDVVSRS
MALEIREGRG VGPDADHIYL HLDHIDPAVL AERLPGITES GKIFAGVDLT RQPLPVVPTV
HYNMGGIPCN YHGEVVTLGK DGPDTVVPGL FAVGEAACVS VHGANRLGSN SLIDLVVFGR
ATGHRLKELL TPGAAQQPLP KDSADLALAR LDHFRHASGG SPTAEVRTEM QRAMSAHAAV
FRTDELMAEG KEKLAKTYAR MADIHVSDRS LIWNTDLVET LELDNLIAQA TVTMHSAFNR
KESRGAHAHE DFPNRDDANW MKHSVAWFDG WGGKGGDVRL DYRPVHEYTL SDDAEYIKPK
ARVY
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