| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sala_2969 |
|---|
| Symbol | |
|---|
| ID | 4081085 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sphingopyxis alaskensis RB2256 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008048 |
|---|
| Strand | + |
|---|
| Start bp | 3113238 |
|---|
| End bp | 3113945 |
|---|
| Gene Length | 708 bp |
|---|
| Protein Length | 235 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 638011354 |
|---|
| Product | nitroreductase |
|---|
| Protein accession | YP_618007 |
|---|
| Protein GI | 103488446 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG0778] Nitroreductase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 0.788882 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 6 |
|---|
| Fosmid unclonability p-value | 0.0360376 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCAGCGA CTGACATGCC AGCGACCGAC ATGAGCGTGA CGCAGGCGCT CCGCCGGCGG
CGTTCGGTGC GCGCCTTCAC CGACCGGTCG GTCGATCCCG CGCTGCTGAA AGAGATTTTC
GCGGCGGCGC AGCGCGCCCC CTCGGGCGGC AATCTTCAGC CGTGGCAGGC GACGGTGCTC
ACCGGCGAAG CGTGGCAGGC GGTCAGGCAA GCCGTCGCCG CGCGGATCGC GATGGGGCGC
GCGGGGCAGG AGCCCGAATA TGACATCTAT CCCCCGGCGC TCACCGCGCC GTGGACCGAC
CGCCGCTTTG GTGTCGGCGA GGCGCTCTAT GCCTCGCTCG GCATCCCGCG CGAGGACAAA
AGAGGGCGAC TCGCTCAGTT CATGGACAAT TACCGGGGTT TCGGCGCACC GGTGATGCTT
TTCCTCCATT GCTCGCGCAT CATGGGGCCA CCGCAATGGG CCGACATGGG CATGTGGCTG
CAATCGGTGA TGCTGATGCT CGTCGAACAG GGCCTCGCCA GCTGCCCGCA GGAATGCTGG
GCGATGTATG GCGCGACCGT GCGGCGCACG ATCGGGCTGG GCGACGACCA GATTTTGTTC
ACCGGGCTGG CGATCGGCTA TGCCGACGAG GATGCGGCGG TGAACCAGTG GCCGGTGCCG
CGCGCGCCGA TCGACGAAGC GATTGACTGG AAAGGATTTG GGACATGA
|
|---|
| Protein sequence | MPATDMPATD MSVTQALRRR RSVRAFTDRS VDPALLKEIF AAAQRAPSGG NLQPWQATVL
TGEAWQAVRQ AVAARIAMGR AGQEPEYDIY PPALTAPWTD RRFGVGEALY ASLGIPREDK
RGRLAQFMDN YRGFGAPVML FLHCSRIMGP PQWADMGMWL QSVMLMLVEQ GLASCPQECW
AMYGATVRRT IGLGDDQILF TGLAIGYADE DAAVNQWPVP RAPIDEAIDW KGFGT
|
|---|
| |