Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sala_2960 |
Symbol | |
ID | 4081076 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sphingopyxis alaskensis RB2256 |
Kingdom | Bacteria |
Replicon accession | NC_008048 |
Strand | + |
Start bp | 3102820 |
End bp | 3103569 |
Gene Length | 750 bp |
Protein Length | 249 aa |
Translation table | 11 |
GC content | 73% |
IMG OID | 638011345 |
Product | LuxR family transcriptional regulator |
Protein accession | YP_617998 |
Protein GI | 103488437 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG4566] Response regulator |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 0.00617969 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | 7 |
Fosmid unclonability p-value | 0.0717872 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | TTGGCGCGAT TCAAATGCGA AAAAGCGATC CGTTATGGCG CCATCGCCGA TGCGTTCGCG CTGTCGCGCG CGGCCGGGGT CGGGCAGCGT GGAGACGTGA CCGGACCCTG CGGCCATATC CATCTGATCC TTCCCGACCC GGTCGAGCGC GCGGCCTGCT TCCGTGTGCT GACGGCGGGG CCCGCGCGCG TCGTGCGCAG CTTTGCCAGC GCCGACGACT GGTTTGCGGC GGGCGATGAC GACAGCTGCG CGGTGCTCCT GCTGCGCTGG GAGCAGCCGG GCGCGGTAAG CGGTGCCGCG CTGCTGGCGC ATGCCGCCGC GCGCGACGGC ATCGCCGCCT TCGTCGCCGC CGAAAGGCTG AGCATCGCCG AATCGCGCGC GATCCTGTTG AGCGGCGCGC GCGACCTGCT TCCCGCGCCG CTCGATCCCC GGCTCGTGCG CCGCACGATC GACGGTGCGC TCGCCGACCA CGCGGCCTGG CAAGTGGCGT GCGAGCGCCA GCGCGCGGCC GCGGCGCGGC TCGCCGCGCT GACCCCGCGC GAACGCGACA TATTGGAGGG TATCGCCGCC GGGCTCGGCA ACAAGGCGAT CGCGCAGCGG CTCGATCTCA GCCCGCGCAC GGTCGAGGTT CACCGCGCGA ACATCATGCG CCGCGCGGGC GCGGGCCATG TCGCCGAACT GCTGCACCTG CGTTTCGTCG CCGAGCAGGC GCGCGTCGCG CCGGGCAATC GGGTCCGTTT CGGCGCATGA
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Protein sequence | MARFKCEKAI RYGAIADAFA LSRAAGVGQR GDVTGPCGHI HLILPDPVER AACFRVLTAG PARVVRSFAS ADDWFAAGDD DSCAVLLLRW EQPGAVSGAA LLAHAAARDG IAAFVAAERL SIAESRAILL SGARDLLPAP LDPRLVRRTI DGALADHAAW QVACERQRAA AARLAALTPR ERDILEGIAA GLGNKAIAQR LDLSPRTVEV HRANIMRRAG AGHVAELLHL RFVAEQARVA PGNRVRFGA
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