| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sala_2959 |
|---|
| Symbol | |
|---|
| ID | 4081075 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sphingopyxis alaskensis RB2256 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008048 |
|---|
| Strand | + |
|---|
| Start bp | 3101837 |
|---|
| End bp | 3102766 |
|---|
| Gene Length | 930 bp |
|---|
| Protein Length | 309 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 76% |
|---|
| IMG OID | 638011344 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_617997 |
|---|
| Protein GI | 103488436 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.00883082 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 7 |
|---|
| Fosmid unclonability p-value | 0.0672974 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCAAATC GCATTTTCAT TCCGGCCCTC GCGCTCGCCG CGTCGGCCAT GGCTTTTTCG
GCGCCGGCCG CGGCGCAGCT GCTTGGCGGC AGCGGCGGAC TGGGCGGCGG GCTTGGCGGA
ACGCTGGGCG GCACGCTCGG CAATCCGACC GGGCCGATCG GTGGCACGCT CGGCACGGCG
GGCGAACTTG CGGGTTCGGG CCGCGGCGAG GCCAAGGTCG ACCGCCGTTC GGGCCGCGTC
GAAGGCCGCG GCGGCGCCGA CGCGCGCGGC AGCGGCTCGG CCGATGCCGG CGGCAATCTG
CTCGGCAGCA CGCTGGGCGG CAACGCTCAG GGTTCGGGCG GGGCCTCGGC CGACGGCAGC
GTCGGCGCGC AGGCGGTCGG CACCGATTTC GCGCGTGACA CGGTCGGCGG CGCCCTCGGC
ACCGCGCGCG GCGCCGCCGC CACCGCCACC GGGACCGCGC AAGGCGCGGC CGGGGCTGTC
CGCGACCGGG CGGGCGGCGC GCTGTCGAAC GTCTCAGGCA GCGCCAGCGC CGCCGGTTCG
GCCGCGGGCA GTTTTCAGGG CAGCCTCGGC CAGCTCGCGG CGGCCGGCAG CGGCGCGGCC
AGCGGCAGCG GCATGTTCGC TGTCATGCCG GGAATGCCCG TCACCGACCC GCGCGGCAAG
GTGATCGGCT ATGTCCATGA CGTGCGGCAG ACGGGCCGCG GCGTCGTCGA GGCGGTGACG
GTCGAGGTCG GCAACCGCGT CGCGACGCTT CCGGCCGCCA GCTTTGCCGG ATCGGGCGAT
GTGCTCGTCA GCGGCATGAC CAAGGGCCAG CTCAAGGACG CCGCAAAGGC GCAGGAGCGG
GCGGCCGAAG AGGATGGCAG CGCGCCGCCC GCCCGGTCGA CGTCGTCGCG GGGCAACCGC
GCCGAACGCG GCCACACCCG CGCCGACTGA
|
|---|
| Protein sequence | MANRIFIPAL ALAASAMAFS APAAAQLLGG SGGLGGGLGG TLGGTLGNPT GPIGGTLGTA
GELAGSGRGE AKVDRRSGRV EGRGGADARG SGSADAGGNL LGSTLGGNAQ GSGGASADGS
VGAQAVGTDF ARDTVGGALG TARGAAATAT GTAQGAAGAV RDRAGGALSN VSGSASAAGS
AAGSFQGSLG QLAAAGSGAA SGSGMFAVMP GMPVTDPRGK VIGYVHDVRQ TGRGVVEAVT
VEVGNRVATL PAASFAGSGD VLVSGMTKGQ LKDAAKAQER AAEEDGSAPP ARSTSSRGNR
AERGHTRAD
|
|---|
| |